Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AL537_RS12060 Genome accession   NZ_CP014036
Coordinates   2502389..2503912 (-) Length   507 a.a.
NCBI ID   WP_006742940.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_105     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2497389..2508912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL537_RS12040 (AL537_12040) - 2497397..2498827 (-) 1431 WP_167394155.1 lipopolysaccharide biosynthesis protein -
  AL537_RS12045 (AL537_12045) - 2498820..2499992 (-) 1173 WP_104971669.1 glycosyltransferase family 4 protein -
  AL537_RS12050 (AL537_12050) - 2500004..2501188 (-) 1185 WP_104971670.1 glycosyltransferase -
  AL537_RS12055 (AL537_12055) - 2501344..2502414 (-) 1071 WP_104971671.1 glycosyltransferase family 4 protein -
  AL537_RS12060 (AL537_12060) luxO 2502389..2503912 (-) 1524 WP_006742940.1 sigma-54 dependent transcriptional regulator Regulator
  AL537_RS12065 (AL537_12065) - 2504189..2504569 (-) 381 WP_046875251.1 Hpt domain-containing protein -
  AL537_RS12070 (AL537_12070) - 2504581..2505267 (-) 687 WP_053807396.1 AAA family ATPase -
  AL537_RS12075 (AL537_12075) - 2505267..2507369 (-) 2103 WP_104971672.1 SLBB domain-containing protein -
  AL537_RS12080 (AL537_12080) - 2507366..2508232 (-) 867 WP_046875254.1 OmpA family protein -
  AL537_RS12085 (AL537_12085) - 2508259..2508579 (-) 321 WP_005394270.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 56798.65 Da        Isoelectric Point: 6.1651

>NTDB_id=167757 AL537_RS12060 WP_006742940.1 2502389..2503912(-) (luxO) [Vibrio diabolicus strain FDAARGOS_105]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKHFLTTYAKQDKKKFSTIDSEAQHIIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTLNHLPAQLTRKSKTARTSTPA
HVTQEPATPPTITSRPVYVEEQSASAREPSIPTPEPNIQSSAAASPYFNSDGTIRPMWQVEREAIQNAIAYCDGNVLNAA
VMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=167757 AL537_RS12060 WP_006742940.1 2502389..2503912(-) (luxO) [Vibrio diabolicus strain FDAARGOS_105]
ATGAGACCAAGGGTGTTACTGGTAGAAGACTCTACTTCACTAGCCATACTTTATAAGCAGTATGTGAAAGACGAACCTTA
TGACATTTTTCATGTTGAAACAGGTCGCGAAGCAATTCAATTTATTGAAAGAAGCAAACCTCAACTCATCATTCTCGATT
TGAAACTGCCCGATATGTCTGGTGAAGACGTATTGGATTGGATCAACCAGAATGACATTCCGACATCCGTTATTATTGCT
ACAGCGCACGGCAGCGTAGACTTAGCCGTTAACCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAACCTATTAACGC
TGATCGCCTAAAAACTTCTGTTGCATTACACCTCAAACGCGCCAAATTGGAAGATTTAGTAGAAAATATTCAGTCCAAGT
TTGATCGCCATAACTATCACGGATTTATCGGTTCAAGTCTCCCAATGCAGGCGGTATATAAAACTATTGATGCCGTTGCT
CCAACATCTGCCAGTGTCTTTATTGTGGGTGAAAGCGGCACAGGTAAAGAAGTCTGTGCTGAAGCCGTGCACCGTCAGAG
CGACCGTAAAGACAAACCTTTTATTGCTATAAACTGCGGGGCTATCCCACGAGATTTAATGGAAAGTGAGATTTTTGGCC
ATGTTAAAGGCGCATTTACCGGGGCCACAACAGACCGAAAAGGTGCTGCGACGCTGGCTCACGGTGGTACGCTTTTTCTC
GATGAACTGTGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTCCGTTTTCTTCAAACAGGAACCTACACACCGCTTGG
TGGCACTCGAGAGATGAAGGTGGATGTTCGAATCATTTGTGCCACCAACCGAGATCCATTAACAGAAGTGGAAGAAGGTC
GTTTTCGTGAAGATTTGTATTACCGCGTACACGTAATACCTATCGATATGCCCCCTCTGCGCGAGCGAGGAAGTGACATT
GTCACGCTAGCCAAGCACTTTTTGACCACTTATGCCAAACAGGACAAAAAGAAATTCTCAACAATCGACAGCGAAGCTCA
ACATATCATCAAGCACTACGAATGGCCGGGTAATGTAAGGCAATTGCAAAACATCATACGTAACATTGTGGTGCTTAATA
ATGACGAAAAAGTCACGCTGAATCACCTACCCGCTCAACTGACTAGAAAGTCTAAAACAGCGAGAACATCCACTCCCGCA
CATGTAACTCAAGAGCCAGCAACCCCTCCAACAATAACATCCCGACCAGTGTATGTTGAGGAACAATCGGCCTCCGCTAG
AGAACCGTCAATACCGACACCGGAACCTAACATACAATCCTCAGCGGCTGCCTCGCCGTACTTTAACTCTGATGGAACCA
TTCGCCCTATGTGGCAAGTGGAGCGTGAGGCGATTCAAAACGCAATCGCATACTGTGATGGCAACGTACTCAATGCCGCC
GTAATGCTGGAGCTAAGCCCATCTACGGTTTACCGAAAAAAACAAGCGTGGGAAGCGGATGAAATTAATCTCGAACAATC
TTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(457-493)

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.899

97.239

0.485

Multiple sequence alignment