Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   A4W87_RS08455 Genome accession   NZ_CP017273
Coordinates   1649329..1649484 (+) Length   51 a.a.
NCBI ID   WP_251932761.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.1396     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1644329..1654484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W87_RS08435 (A4W87_08390) guaB 1644615..1646096 (-) 1482 WP_076631972.1 IMP dehydrogenase -
  A4W87_RS08440 (A4W87_08395) - 1646345..1647142 (+) 798 WP_076631971.1 tyrosine-protein phosphatase -
  A4W87_RS08445 (A4W87_08400) - 1647585..1648019 (+) 435 WP_056947310.1 hypothetical protein -
  A4W87_RS08450 (A4W87_08405) - 1648040..1649314 (+) 1275 WP_251932759.1 UvrD-helicase domain-containing protein -
  A4W87_RS08455 helD 1649329..1649484 (+) 156 WP_251932761.1 ATP-binding domain-containing protein Machinery gene
  A4W87_RS08460 (A4W87_08410) - 1649661..1651453 (-) 1793 Protein_1610 ABC transporter ATP-binding protein -
  A4W87_RS08465 (A4W87_08415) - 1651457..1653168 (-) 1712 Protein_1611 ABC transporter ATP-binding protein -
  A4W87_RS08470 (A4W87_08420) - 1653308..1653979 (+) 672 WP_076631969.1 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 51 a.a.        Molecular weight: 5687.42 Da        Isoelectric Point: 4.6286

>NTDB_id=167751 A4W87_RS08455 WP_251932761.1 1649329..1649484(+) (helD) [Latilactobacillus sakei strain TMW 1.1396]
MEFDNVLLYDLTNDYYTEPAVGRNRLYTAISRATHLLTLSALGTLPNALNA

Nucleotide


Download         Length: 156 bp        

>NTDB_id=167751 A4W87_RS08455 WP_251932761.1 1649329..1649484(+) (helD) [Latilactobacillus sakei strain TMW 1.1396]
TTGGAATTTGATAACGTCTTGTTATACGACTTAACCAATGACTACTACACTGAACCAGCAGTGGGACGTAACCGCCTCTA
CACCGCTATTTCAAGAGCGACCCATCTTTTAACGCTCAGCGCACTTGGCACCTTACCAAATGCATTAAATGCATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(2-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

45.455

86.275

0.392

Multiple sequence alignment