Detailed information NTG0167727

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AL537_RS01635
• Genome accession: NZ_CP014036
• Coordinates: 345283..346269 (-)
• Length: 328 a.a.
• NCBI ID: WP_005393877.1
• Uniprot ID: A0AAE4M7L2
• Organism: Vibrio diabolicus strain FDAARGOS_105
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 340283..351269

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL537_RS01620 (AL537_01620)	recA	340828..341871 (-)	1044	WP_005393872.1	recombinase RecA	Machinery gene
AL537_RS01625 (AL537_01625)	pncC	342072..342554 (-)	483	WP_104970950.1	nicotinamide-nucleotide amidase	-
AL537_RS01630 (AL537_01630)	mutS	342639..345200 (+)	2562	WP_006743294.1	DNA mismatch repair protein MutS	-
AL537_RS01635 (AL537_01635)	rpoS	345283..346269 (-)	987	WP_005393877.1	RNA polymerase sigma factor RpoS	Regulator
AL537_RS01640 (AL537_01640)	-	346350..347273 (-)	924	WP_006743295.1	peptidoglycan DD-metalloendopeptidase family protein	-
AL537_RS01645 (AL537_01645)	-	347287..347913 (-)	627	WP_104970951.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AL537_RS01650 (AL537_01650)	surE	347913..348689 (-)	777	WP_046875092.1	5'/3'-nucleotidase SurE	-
AL537_RS01655 (AL537_01655)	truD	348689..349732 (-)	1044	WP_065646113.1	tRNA pseudouridine(13) synthase TruD	-
AL537_RS01660 (AL537_01660)	ispF	349779..350255 (-)	477	WP_012841409.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AL537_RS01665 (AL537_01665)	ispD	350273..350977 (-)	705	WP_104970952.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AL537_RS01670 (AL537_01670)	ftsB	350979..351260 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37384.30 Da
• Isoelectric Point: 4.7299

>NTDB_id=167727 AL537_RS01635 WP_005393877.1 345283..346269(-) (rpoS) [Vibrio diabolicus strain FDAARGOS_105]
MSISNTVTKVEEFAFDNASVKTIDNELEKSSSTESKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=167727 AL537_RS01635 WP_005393877.1 345283..346269(-) (rpoS) [Vibrio diabolicus strain FDAARGOS_105]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAAATCATCATCCACAGAAAGCAAAACGGCTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGACGCAACTC
AGTTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCCGAAGAAGAAGTGCTTTATGCTCGACGAGCCCTGCGT
GGCGACGAAGCGGCACGTAAACGTATGATCGAAAGTAACCTACGTTTGGTGGTCAAGATCTCTCGTCGATATAGTAATCG
CGGCCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTTGGTTTGATCCGTGCGGTCGAGAAGTTCGATCCAGAGCGTG
GTTTCCGCTTCTCTACTTATGCGACCTGGTGGATCCGACAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACGATC
CGTCTACCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGATCACGA
ACCTACCGCAGAAGAAATTGCTGCTCAGTTAGATATTCCAGTCGAAGATGTAAGCAAAATGCTACGTCTCAATGAGCGTA
TCAGTTCTGTCGACACACCAATCGGTGGTGACGGTGAAAAAGCGCTGTTGGATATTATTCCCGACGCAAACAACTCCGAT
CCAGAAGTCTCGACTCAAGATGACGATATCAAATCATCGCTGATTCATTGGTTAGAAGAGTTGAATCCAAAACAGAAAGA
AGTACTTGCACGACGTTTTGGTCTTCTAGGCTATGAGCCTTCGACGCTTGAAGAAGTTGGTCGAGAGATTGGTTTGACAC
GTGAGCGTGTACGTCAAATCCAAGTAGAAGGTTTACGTCGTCTTCGTGAGGTTTTAATCAAGCAAGGTTTGAATATGGAA
AACTTATTTAACGTCGAAGATGATTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.533	100	0.851