Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AL537_RS01500 Genome accession   NZ_CP014036
Coordinates   323112..323630 (-) Length   172 a.a.
NCBI ID   WP_005396698.1    Uniprot ID   A0AAE4S8W0
Organism   Vibrio diabolicus strain FDAARGOS_105     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 318112..328630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL537_RS01475 (AL537_01475) rimM 318167..318715 (-) 549 WP_005379964.1 ribosome maturation factor RimM -
  AL537_RS01480 (AL537_01480) rpsP 318745..318993 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  AL537_RS01485 (AL537_01485) ffh 319203..320585 (-) 1383 WP_104970941.1 signal recognition particle protein -
  AL537_RS01490 (AL537_01490) - 320810..321604 (+) 795 WP_047008980.1 inner membrane protein YpjD -
  AL537_RS01495 (AL537_01495) - 321729..322997 (+) 1269 WP_005396696.1 CNNM domain-containing protein -
  AL537_RS01500 (AL537_01500) luxS 323112..323630 (-) 519 WP_005396698.1 S-ribosylhomocysteine lyase Regulator
  AL537_RS01505 (AL537_01505) - 323715..324281 (-) 567 WP_244190842.1 hypothetical protein -
  AL537_RS01510 (AL537_01510) gshA 324345..325913 (-) 1569 WP_104970943.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19078.77 Da        Isoelectric Point: 4.6153

>NTDB_id=167724 AL537_RS01500 WP_005396698.1 323112..323630(-) (luxS) [Vibrio diabolicus strain FDAARGOS_105]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNSDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKSILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=167724 AL537_RS01500 WP_005396698.1 323112..323630(-) (luxS) [Vibrio diabolicus strain FDAARGOS_105]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGCATGAATGCACCAGCAGTGCGAGTGGCGAAGACCATGCAGAC
CCCAAAAGGGGACACGATTACTGTCTTCGATTTACGCTTTACCGCGCCAAACAAAGACATCCTTTCTGAAAAAGGTATTC
ATACGCTAGAGCACCTTTATGCAGGCTTTATGCGCAATCATCTTAACAGCGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACGGGCTTTTACATGAGTCTGATTGGCACTCCATCAGAGCAGCAAGTAGCGGATGCTTGGATTGCGGC
CATGGAAGACGTACTAAAGGTAGAAAGCCAGAACAAGATCCCTGAACTCAACGAATACCAATGTGGCACGGCAGCGATGC
ACTCTTTAGAAGAAGCACAACAGATCGCCAAGAGCATTTTGGATGCTGGTGTATCGGTGAACAAAAATGATGAACTGGCT
TTGCCTGAATCGATGCTAAAAGAGCTGCGTATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment