Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AL536_RS44885 Genome accession   NZ_CP014035
Coordinates   3073600..3074232 (-) Length   210 a.a.
NCBI ID   WP_004728582.1    Uniprot ID   A0A7X4LI26
Organism   Vibrio fluvialis strain ATCC 33809     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3068600..3079232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL536_RS44865 (AL536_21885) - 3068679..3069890 (+) 1212 WP_020329456.1 aspartate aminotransferase family protein -
  AL536_RS44870 (AL536_21890) astA 3069990..3071009 (+) 1020 WP_020329458.1 arginine N-succinyltransferase -
  AL536_RS44875 (AL536_21895) astD 3071043..3072500 (+) 1458 WP_024374086.1 succinylglutamate-semialdehyde dehydrogenase -
  AL536_RS44880 (AL536_21900) - 3072686..3073480 (+) 795 WP_020329460.1 DUF1338 domain-containing protein -
  AL536_RS44885 (AL536_21905) crp 3073600..3074232 (-) 633 WP_004728582.1 cAMP-activated global transcriptional regulator CRP Regulator
  AL536_RS44890 (AL536_21910) - 3074474..3075343 (-) 870 WP_004728583.1 phosphoribulokinase -
  AL536_RS44895 (AL536_21915) - 3075438..3075647 (-) 210 WP_061057161.1 YheU family protein -
  AL536_RS44900 (AL536_21920) - 3075739..3076716 (-) 978 WP_020329462.1 hydrolase -
  AL536_RS44905 (AL536_21925) - 3076829..3077302 (-) 474 WP_020329463.1 TIGR02444 family protein -
  AL536_RS44910 (AL536_21930) - 3077299..3079221 (-) 1923 WP_020329464.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23593.41 Da        Isoelectric Point: 8.2772

>NTDB_id=167717 AL536_RS44885 WP_004728582.1 3073600..3074232(-) (crp) [Vibrio fluvialis strain ATCC 33809]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=167717 AL536_RS44885 WP_004728582.1 3073600..3074232(-) (crp) [Vibrio fluvialis strain ATCC 33809]
ATGGTTCTAGGTAAACCTCAAACCGACCCGACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCTTCAAA
AAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAGGAGATGATTCTGTCTTACCTGAACCAAGGTGACTTCATCGGTGAGCTTGGCTTGTTTGAAGAAGGT
CAGGAGCGTACTGCCTGGGTTCGTGCAAAATCTCCTTGTGAAGTCGCGGAAATTTCATTCAAGAAATTCCGTCAGCTGAT
TCAGGTTAACCCGGACATCCTAATGCGCCTGTCTGGCCAGATGGCTCGCCGTCTGCAAGTGACTAGCCAAAAAGTGGGTG
ACCTGGCGTTCCTAGACGTAACTGGTCGCATCGCGCAGACCCTACTGAACCTGGCGAAACAACCAGACGCCATGACCCAC
CCAGACGGTATGCAAATCAAGATCACTCGTCAGGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATTTCTGCACACGGTAAGACTATCGTGGTATACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4LI26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

99.048

100

0.99
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment