Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AL536_RS40915 Genome accession   NZ_CP014035
Coordinates   2257250..2257768 (-) Length   172 a.a.
NCBI ID   WP_020330449.1    Uniprot ID   S7I1E9
Organism   Vibrio fluvialis strain ATCC 33809     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2252250..2262768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL536_RS40890 (AL536_17990) rimM 2252372..2252926 (-) 555 WP_020330455.1 ribosome maturation factor RimM -
  AL536_RS40895 (AL536_17995) rpsP 2252954..2253202 (-) 249 WP_020330454.1 30S ribosomal protein S16 -
  AL536_RS40900 (AL536_18000) ffh 2253428..2254810 (-) 1383 WP_020330453.1 signal recognition particle protein -
  AL536_RS40905 (AL536_18005) - 2255023..2255817 (+) 795 WP_020330452.1 cytochrome C assembly family protein -
  AL536_RS40910 (AL536_18010) - 2255907..2257181 (+) 1275 WP_020330450.1 HlyC/CorC family transporter -
  AL536_RS40915 (AL536_18015) luxS 2257250..2257768 (-) 519 WP_020330449.1 S-ribosylhomocysteine lyase Regulator
  AL536_RS40920 (AL536_18020) - 2257794..2258396 (-) 603 WP_061056872.1 hypothetical protein -
  AL536_RS40925 (AL536_18025) gshA 2258398..2259963 (-) 1566 WP_061056873.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18909.87 Da        Isoelectric Point: 5.5627

>NTDB_id=167695 AL536_RS40915 WP_020330449.1 2257250..2257768(-) (luxS) [Vibrio fluvialis strain ATCC 33809]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSEKGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEEQVAAAWLAAMQDVLKVESQDKIPELNEYQCGTAAMHSLTEAKAIAEKVIAAGIQVNKNDELA
LPESMLKELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=167695 AL536_RS40915 WP_020330449.1 2257250..2257768(-) (luxS) [Vibrio fluvialis strain ATCC 33809]
ATGCCATTATTAGACAGTTTTACCGTCGATCACACTCGCATGAACGCACCGGCTGTGCGTGTTGCGAAAACCATGCAGAC
GCCAAAAGGCGACACCATTACGGTGTTTGACCTGCGTTTTACGATGCCAAACAAAGACATTCTGTCAGAGAAAGGGATTC
ACACTCTTGAGCATCTTTACGCGGGCTTTATGCGCGCGCATCTGAACGGTGCGAACGTGGAAATCATCGATATTTCCCCA
ATGGGCTGCCGTACAGGTTTTTACATGAGCCTGATTGGTGCGCCAAGTGAAGAACAGGTGGCTGCCGCTTGGTTGGCTGC
AATGCAAGATGTTCTGAAGGTGGAAAGTCAGGACAAGATTCCTGAACTGAACGAATACCAGTGTGGTACGGCAGCGATGC
ACTCGCTGACGGAAGCTAAAGCGATTGCAGAGAAAGTGATTGCCGCAGGCATTCAGGTCAACAAGAATGATGAACTGGCA
CTGCCAGAGTCAATGTTGAAAGAGCTGAAAGTACACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7I1E9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

91.279

100

0.913

Multiple sequence alignment