Detailed information NTG0167690

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: A4W87_RS02320
• Genome accession: NZ_CP017273
• Coordinates: 460218..462383 (-)
• Length: 721 a.a.
• NCBI ID: WP_076632333.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain TMW 1.1396
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 455218..467383

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A4W87_RS02300 (A4W87_02290)	-	456286..457862 (+)	1577	Protein_428	peptide chain release factor 3	-
A4W87_RS02305 (A4W87_02295)	-	457975..459060 (-)	1086	WP_016265505.1	MucBP domain-containing protein	-
A4W87_RS02310 (A4W87_02300)	-	459267..459689 (-)	423	WP_011375158.1	PPC domain-containing DNA-binding protein	-
A4W87_RS02315 (A4W87_02305)	-	459814..460110 (-)	297	WP_011375157.1	DUF1827 family protein	-
A4W87_RS02320 (A4W87_02310)	clpC	460218..462383 (-)	2166	WP_076632333.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
A4W87_RS02325 (A4W87_02315)	-	462617..462808 (+)	192	WP_011375155.1	hypothetical protein	-
A4W87_RS02330 (A4W87_02320)	-	462951..463217 (+)	267	WP_004265632.1	phosphocarrier protein HPr	-
A4W87_RS02335 (A4W87_02325)	ptsP	463214..464938 (+)	1725	WP_198929697.1	phosphoenolpyruvate--protein phosphotransferase	-
A4W87_RS02340 (A4W87_02330)	-	465088..465528 (+)	441	WP_016265501.1	CopY/TcrY family copper transport repressor	-

Sequence

Protein

• Length: 721 a.a.
• Molecular weight: 79701.08 Da
• Isoelectric Point: 5.0555

>NTDB_id=167690 A4W87_RS02320 WP_076632333.1 460218..462383(-) (clpC) [Latilactobacillus sakei strain TMW 1.1396]
MLCQNCQKNPATIHLYTSVNGQNQAINLCQNCYQALKQQGMSGQYNDPFGFSNLDELFNAINNPNAERNAANQGPQTQGG
RNGGGNNGQNGESLLSQFGVNLTNLAKGGQIDPVIGRDKEIARVIEILNRRTKNNPVLIGEAGVGKTAVVEGLAQKIADG
DVPAKLKDRQVIRLDVVSLVQGTGIRGQFEERMQQLITELKQNKQIILFIDEIHEIVGAGNAEGGMDAGNVLKPALARGE
LQLVGATTNNEFRQIEKDAALARRLQPVAVNEPSVDETVLILKGLQDKYESYHHVHYTDEALKAAAALSSRYIQDRYLPD
KAIDLLDEAGSKKNLTIILMDPKELEAKIKSAEAQKQEALKQEDYEKAATYRDQVTQLSEMKANNSVEKSQEPTITEKDM
EKIVEEKTHIPVGELKAQEQAQLKNLAQDLEAHVIGQDTAVDKVARSIRRSRIGFNKSGRPIGSFLFVGPTGVGKTELAK
QIAKELFGSTDAMIRFDMSEYMEKFSVSKLIGSPPGYVGYEEAGQLTEQVRRNPYSLILLDEIEKAHPDVMHMFLQILDD
GRLTDSQGRTVSFKDTIIIMTSNAGQTDAEANVGFGAAVAGQTHSILDQLTNYFKPEFLNRFDDIIEFQPLSKDNLLKIV
SLMLDQTNAMIADQGLHIAVTDDAKSKLVDLGYNPEMGARPLRRVIQEQIEDRVADYYLDHPEHKQLKAQLNDDQIQIVQ
G

Nucleotide

• Length: 2166 bp

>NTDB_id=167690 A4W87_RS02320 WP_076632333.1 460218..462383(-) (clpC) [Latilactobacillus sakei strain TMW 1.1396]
ATGCTTTGTCAAAATTGTCAAAAAAATCCAGCAACAATCCATCTCTACACTAGCGTCAATGGTCAAAACCAAGCCATTAA
CCTTTGTCAAAACTGTTATCAAGCACTAAAGCAACAAGGAATGAGTGGTCAATATAATGATCCCTTTGGTTTTAGTAATC
TTGATGAACTCTTCAATGCAATCAACAATCCAAACGCTGAACGCAATGCTGCTAACCAAGGCCCCCAAACACAAGGTGGC
CGTAATGGCGGCGGTAACAACGGTCAAAATGGTGAAAGTCTACTCAGCCAATTTGGTGTGAACCTCACCAACCTTGCTAA
GGGTGGTCAAATTGATCCGGTGATTGGTCGCGATAAGGAAATCGCGCGCGTCATCGAAATTCTCAATCGGCGTACCAAGA
ATAATCCAGTCTTAATTGGTGAAGCCGGCGTTGGTAAAACAGCCGTTGTCGAAGGTTTAGCGCAAAAAATTGCCGATGGC
GACGTTCCTGCTAAATTAAAGGATCGCCAAGTGATTCGCTTGGATGTCGTTTCATTAGTACAAGGGACTGGTATTCGCGG
TCAATTTGAAGAACGGATGCAACAGTTGATCACTGAGCTCAAACAAAATAAGCAGATTATCCTCTTTATTGATGAAATTC
ACGAAATCGTTGGCGCCGGCAATGCTGAAGGCGGCATGGATGCTGGTAACGTGTTGAAGCCAGCTCTTGCGCGTGGCGAA
TTACAACTCGTTGGCGCCACAACTAATAATGAATTCCGTCAGATTGAAAAAGACGCAGCCCTTGCACGTCGTCTTCAACC
GGTCGCGGTCAACGAACCATCTGTTGACGAAACCGTTCTAATTCTCAAAGGGCTTCAAGATAAATACGAAAGTTATCACC
ACGTTCACTATACGGACGAGGCGCTTAAAGCAGCAGCGGCCCTTTCTAGTCGTTATATCCAAGATCGTTATTTGCCTGAT
AAGGCTATCGACCTTTTGGATGAAGCAGGCTCTAAGAAAAACTTGACGATTATCTTGATGGATCCTAAGGAATTAGAAGC
CAAGATTAAATCTGCAGAAGCACAAAAACAAGAAGCCCTCAAACAAGAAGATTACGAAAAAGCAGCTACCTATCGTGATC
AAGTCACACAGCTCTCTGAAATGAAAGCTAATAATTCAGTTGAAAAATCCCAAGAACCAACAATCACCGAAAAGGATATG
GAAAAAATTGTCGAAGAAAAAACCCATATTCCAGTTGGCGAATTAAAGGCGCAAGAACAAGCTCAACTTAAAAACTTAGC
GCAAGATCTTGAAGCACATGTCATTGGTCAAGATACCGCAGTTGATAAAGTCGCTCGTTCAATTCGTCGTAGTCGAATTG
GCTTTAATAAATCCGGCCGACCAATTGGCTCCTTCCTCTTTGTTGGCCCAACCGGGGTTGGTAAAACGGAATTAGCCAAA
CAAATTGCCAAAGAACTCTTTGGCAGTACCGATGCGATGATTCGCTTTGATATGAGTGAATACATGGAGAAATTCAGTGT
GTCAAAATTGATTGGTTCACCTCCTGGCTACGTTGGTTACGAAGAAGCCGGGCAATTAACGGAACAAGTTCGTCGGAACC
CTTATAGTTTGATTCTTTTGGATGAAATCGAAAAGGCTCACCCTGACGTTATGCACATGTTCTTACAAATTCTAGATGAC
GGTCGTCTAACCGATTCACAAGGTCGGACTGTCAGCTTCAAAGACACAATCATTATCATGACGTCTAACGCTGGACAAAC
TGATGCTGAGGCTAACGTTGGTTTCGGTGCAGCTGTCGCTGGCCAAACCCATTCAATTCTCGATCAGTTAACGAACTACT
TTAAACCAGAATTCTTAAATCGTTTCGACGATATTATTGAATTCCAACCATTAAGTAAAGATAATCTATTAAAGATTGTC
AGCTTAATGCTTGATCAAACTAACGCGATGATTGCCGATCAAGGCCTCCACATTGCTGTGACGGATGACGCTAAATCTAA
ATTAGTCGATTTGGGCTACAACCCTGAAATGGGCGCTCGGCCACTACGTCGTGTCATTCAAGAACAAATTGAAGACCGCG
TTGCTGATTATTATTTAGATCATCCAGAACATAAGCAATTAAAAGCGCAGTTAAATGATGATCAGATTCAAATTGTGCAA
GGATAA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (274-372)

• ATPase family associated with various cellular activities (AAA) (AAA) (137-265)

• AAA domain (Cdc48 subfamily) (AAA_2) (460-625)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (631-702)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	67.852	100	0.688
clpE	Streptococcus mutans UA159	66.712	100	0.678
clpE	Streptococcus pneumoniae TIGR4	64.082	100	0.653
clpE	Streptococcus pneumoniae Rx1	64.082	100	0.653
clpE	Streptococcus pneumoniae D39	64.082	100	0.653
clpE	Streptococcus pneumoniae R6	64.082	100	0.653
clpC	Bacillus subtilis subsp. subtilis str. 168	51.351	92.372	0.474
clpC	Streptococcus thermophilus LMG 18311	45.872	90.707	0.416
clpC	Streptococcus thermophilus LMD-9	45.917	90.014	0.413
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	47.173	85.853	0.405
clpC	Streptococcus pneumoniae Rx1	47.231	85.16	0.402
clpC	Streptococcus pneumoniae D39	47.231	85.16	0.402
clpC	Streptococcus pneumoniae TIGR4	47.068	85.16	0.401
clpC	Streptococcus mutans UA159	46.58	85.16	0.397