Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   A4W87_RS02260 Genome accession   NZ_CP017273
Coordinates   448130..448936 (+) Length   268 a.a.
NCBI ID   WP_076632337.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.1396     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 443130..453936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W87_RS02235 (A4W87_02225) - 444558..444800 (-) 243 WP_011375173.1 hypothetical protein -
  A4W87_RS02240 (A4W87_02230) - 444887..445357 (-) 471 WP_011375172.1 nucleoside 2-deoxyribosyltransferase -
  A4W87_RS02245 (A4W87_02235) - 445448..445954 (+) 507 WP_076632338.1 DUF805 domain-containing protein -
  A4W87_RS02250 (A4W87_02240) rlmD 446170..447561 (-) 1392 WP_011375170.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  A4W87_RS02255 (A4W87_02245) - 447949..448128 (+) 180 WP_011375169.1 hypothetical protein -
  A4W87_RS02260 (A4W87_02250) recX 448130..448936 (+) 807 WP_076632337.1 recombination regulator RecX Regulator
  A4W87_RS02265 (A4W87_02255) mutY 448923..450026 (+) 1104 WP_076632336.1 A/G-specific adenine glycosylase -
  A4W87_RS02270 (A4W87_02260) - 450113..450649 (+) 537 WP_011375166.1 DUF402 domain-containing protein -
  A4W87_RS02275 (A4W87_02265) - 450711..452411 (-) 1701 WP_241782033.1 glycosyltransferase family 8 protein -
  A4W87_RS02280 (A4W87_02270) - 452562..453035 (-) 474 WP_035146355.1 hypothetical protein -
  A4W87_RS02285 (A4W87_02275) - 453111..453542 (-) 432 WP_035146359.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31039.97 Da        Isoelectric Point: 6.0698

>NTDB_id=167689 A4W87_RS02260 WP_076632337.1 448130..448936(+) (recX) [Latilactobacillus sakei strain TMW 1.1396]
MPQITKITSQKQKGRYNIFIDEQFAFGVTESVLIKFRLAKGLEIDSSLQRDIQKEDDNAKAYQLALNYLSHQLRTEKELT
QYLRDHEITPEGIETSLTKLRELHYLDDQDYADSYVRTVINTSDKGPKVVRQKLIQKGVSANHIDQALTLYTDEEQVTVG
LATAQKLAKKYRHSSFFEQQQKIKQGLMQKGFGGDNLGRIIDELALEEDSDSEADALAALGEKKWRRYRLLEPRERRMKM
QQALYRKGFNIDAINRFIDDQEVSDDTE

Nucleotide


Download         Length: 807 bp        

>NTDB_id=167689 A4W87_RS02260 WP_076632337.1 448130..448936(+) (recX) [Latilactobacillus sakei strain TMW 1.1396]
ATGCCACAGATTACTAAAATTACCTCACAAAAACAAAAAGGGCGCTATAACATTTTTATCGACGAGCAGTTTGCCTTTGG
GGTGACTGAAAGTGTCTTAATCAAGTTTCGGCTTGCAAAAGGGCTCGAAATCGATAGTAGCTTACAACGTGACATTCAAA
AAGAAGATGACAATGCCAAGGCCTATCAACTGGCCTTGAATTATTTAAGTCACCAATTACGAACGGAAAAAGAATTAACA
CAATACTTGCGTGATCATGAAATTACGCCAGAAGGCATTGAAACCAGTTTGACAAAATTACGCGAACTACATTATTTGGA
TGATCAGGATTACGCGGACAGTTATGTTAGAACGGTGATTAATACTTCGGATAAGGGGCCTAAAGTGGTTCGACAAAAAT
TGATTCAAAAAGGGGTTAGTGCTAATCATATCGATCAAGCATTGACGTTATATACAGATGAAGAACAAGTGACAGTCGGC
TTAGCAACTGCCCAAAAGCTAGCGAAGAAGTACCGCCACAGTTCGTTCTTCGAACAACAGCAAAAGATTAAACAGGGCTT
GATGCAAAAGGGCTTTGGTGGTGATAATTTAGGTCGGATTATTGACGAATTAGCGCTTGAAGAAGACAGTGATAGTGAAG
CAGATGCATTGGCAGCCCTTGGCGAGAAAAAATGGCGCCGTTATCGCCTATTAGAACCGCGCGAGCGGCGGATGAAGATG
CAACAAGCACTTTACCGGAAAGGATTTAATATTGATGCAATCAACCGTTTCATCGACGACCAAGAAGTATCAGATGACAC
CGAGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(83-203)

RecX family (RecX_HTH2)

(204-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

37.262

98.134

0.366

Multiple sequence alignment