Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AL536_RS37165 Genome accession   NZ_CP014035
Coordinates   1435425..1436849 (+) Length   474 a.a.
NCBI ID   WP_024374162.1    Uniprot ID   A0AAX2LNH1
Organism   Vibrio fluvialis strain ATCC 33809     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1430425..1441849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL536_RS37140 (AL536_14305) cobT 1430595..1431623 (-) 1029 WP_061056587.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  AL536_RS37145 (AL536_14310) - 1431637..1432248 (-) 612 WP_020432559.1 flavin reductase family protein -
  AL536_RS37150 (AL536_14315) - 1432633..1433304 (+) 672 WP_061056588.1 NAD(P)H-binding protein -
  AL536_RS37155 (AL536_14320) - 1433517..1434896 (+) 1380 WP_020432565.1 L-cystine transporter -
  AL536_RS37160 (AL536_14325) - 1434975..1435187 (-) 213 WP_038127137.1 hypothetical protein -
  AL536_RS37165 (AL536_14330) sbcB 1435425..1436849 (+) 1425 WP_024374162.1 exodeoxyribonuclease I Machinery gene
  AL536_RS37170 (AL536_14335) - 1436890..1437264 (+) 375 WP_020327588.1 CidA/LrgA family protein -
  AL536_RS37175 (AL536_14340) - 1437255..1437935 (+) 681 WP_020327589.1 LrgB family protein -
  AL536_RS37180 (AL536_14345) cdd 1438137..1439024 (+) 888 WP_020327590.1 cytidine deaminase -
  AL536_RS37185 (AL536_14350) - 1439073..1441781 (-) 2709 WP_061056590.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54430.86 Da        Isoelectric Point: 5.1517

>NTDB_id=167684 AL536_RS37165 WP_024374162.1 1435425..1436849(+) (sbcB) [Vibrio fluvialis strain ATCC 33809]
MQQQHQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPADYLPAPEAALITGIIPQKAMAQGLSEP
EFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGIVWPENDEGFT
SFKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVADLAKDPQPLIDLDVDALHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAA
TIGIDRELCLANLARIRQHPEIREKLAALFGIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTKPELLGELDITFSDK
RIEPLLFRYRARNFPWTLDENDQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=167684 AL536_RS37165 WP_024374162.1 1435425..1436849(+) (sbcB) [Vibrio fluvialis strain ATCC 33809]
ATGCAGCAGCAACACCAGCCAACTTATTTCTTCTTTGACTACGAGACGTGGGGCACCAGCCCGGCCAAAGATCGTCCGAG
TCAGTTTGCTGGTGTACGCACAGACATGGATTTCAACATCATTGGCGAGCCTTTGGTGATCTATTGCCAACTGCCAGCGG
ATTATCTGCCAGCGCCAGAAGCCGCGCTGATTACCGGCATCATTCCACAAAAAGCGATGGCACAAGGGCTTTCAGAGCCG
GAGTTTATTGCCAAAATTCACGCAGAACTGTCGACACCCAACACCACCAGCCTGGGTTATAACAGCATTCGTTTCGACGA
TGAAGTGACACGTTATACCTGCTACCGCAACTTTCTCGACCCGTATGCCTGGAGCTGGCAGAACGGCAACTCACGTTGGG
ATCTGCTCGATGTGATGCGTGCGTGTCATGCGCTGCGCCCAGAAGGCATTGTGTGGCCGGAAAACGACGAAGGTTTTACC
AGCTTCAAACTAGAGCATTTGTCAAAAGCCAACGGCATTGAGCACGAAAATGCGCACGATGCGATGGCCGATGTGATTGC
GACGATTGAACTGGCGAAAAAAGTCAAAGCGGCGCAGCCCAAACTGTTCGATTATTTCTTCTCTATGCGCCATAAGCGCA
AACTGAATGAACTGATTGATATCGTCAACATGACGCCGCTGATGCACGTGTCCGGCATGCTGGGTCGCGAGTGTCAATAC
ACCAGTTGGATTGTGCCGATAGCCTGGCACCCTACCAATCAGAACGCCGTGATTGTGGCTGATTTGGCCAAAGATCCACA
GCCGCTGATCGACTTAGATGTGGACGCTCTGCATGCACGTCTATATACCCGTCACGATGATTTAGCACCGGATGAACTGC
CTGTGCCCGTCAAACTGGTTCATCTCAATAAATGCCCGATTCTGGCACCGGCGAAAACGCTGACCGCAGAAAATGCCGCT
ACCATCGGTATTGATCGCGAATTGTGTCTAGCGAATCTGGCTCGCATTCGTCAGCATCCGGAAATTCGAGAGAAGCTGGC
AGCCCTCTTTGGCATTGAACGAGAATTTGAAGCATCGAACGATGTTGATACACAGCTCTATGATGGATTCTTCTCACCTG
CGGATAAAGCGGCGATGGAGATCATCCGTTCAACCAAACCTGAGCTGCTTGGCGAGCTGGATATTACCTTCAGCGATAAA
CGCATCGAACCGCTGCTGTTTCGCTATCGCGCACGTAACTTCCCTTGGACGCTGGATGAAAATGACCAGCGCCGCTGGGC
GAACCATTGCCGCGACTACTACGAAACACACCTGCCAGATTACATGCTGAATCTGGAAAACTTAGTTCATGAACATGAAA
GTGACGAAAAGAAAATCGCCATTTTAAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-191)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

83.51

99.789

0.833

Multiple sequence alignment