Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   AL536_RS25420 Genome accession   NZ_CP014034
Coordinates   565114..566211 (+) Length   365 a.a.
NCBI ID   WP_024375537.1    Uniprot ID   -
Organism   Vibrio fluvialis strain ATCC 33809     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 525253..566211 565114..566211 within 0


Gene organization within MGE regions


Location: 525253..566211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL536_RS25145 (AL536_02490) - 525253..527139 (-) 1887 WP_061055508.1 hypothetical protein -
  AL536_RS45630 (AL536_22420) - 527168..527275 (-) 108 WP_075990070.1 GpE family phage tail protein -
  AL536_RS25155 (AL536_02495) - 527311..527598 (-) 288 WP_061055509.1 phage tail assembly protein -
  AL536_RS25160 (AL536_02500) gpM 527582..528277 (-) 696 WP_061055510.1 phage terminase small subunit -
  AL536_RS25165 (AL536_02505) - 528288..528653 (-) 366 WP_061055511.1 phage tail tube protein -
  AL536_RS25170 (AL536_02510) - 528657..529790 (-) 1134 WP_061055512.1 phage tail sheath subtilisin-like domain-containing protein -
  AL536_RS25175 (AL536_02515) - 529787..529969 (-) 183 WP_020432118.1 DUF2635 domain-containing protein -
  AL536_RS25180 (AL536_02520) - 529970..530509 (-) 540 WP_061055513.1 phage virion morphogenesis protein -
  AL536_RS25185 (AL536_02525) - 530506..530970 (-) 465 WP_061055514.1 phage tail protein -
  AL536_RS25190 (AL536_02530) - 530970..531419 (-) 450 WP_055452435.1 head completion/stabilization protein -
  AL536_RS25195 (AL536_02535) - 531528..532565 (-) 1038 WP_061055515.1 phage major capsid protein, P2 family -
  AL536_RS25200 (AL536_02540) - 532608..533420 (-) 813 WP_061055516.1 GPO family capsid scaffolding protein -
  AL536_RS25205 (AL536_02545) - 533591..535315 (+) 1725 WP_061056065.1 terminase large subunit domain-containing protein -
  AL536_RS25210 (AL536_02550) - 535326..536291 (+) 966 WP_061055517.1 phage portal protein -
  AL536_RS25215 (AL536_02555) - 536772..537536 (+) 765 WP_061055518.1 hypothetical protein -
  AL536_RS25220 (AL536_02560) - 537696..538643 (+) 948 WP_081094692.1 hypothetical protein -
  AL536_RS25225 (AL536_02565) - 538877..539494 (-) 618 WP_061055519.1 KilA-N domain-containing protein -
  AL536_RS25230 (AL536_02570) - 540086..541096 (+) 1011 WP_061055520.1 hypothetical protein -
  AL536_RS25235 (AL536_02575) - 541093..541632 (+) 540 WP_061055521.1 hypothetical protein -
  AL536_RS25240 (AL536_02580) - 541776..542027 (-) 252 WP_004726819.1 hypothetical protein -
  AL536_RS25245 (AL536_02585) - 542018..542248 (-) 231 WP_020329260.1 hypothetical protein -
  AL536_RS25250 (AL536_02590) - 542259..542675 (-) 417 WP_061055522.1 glycoside hydrolase family protein -
  AL536_RS25255 (AL536_02595) - 542819..543295 (-) 477 WP_061055523.1 hypothetical protein -
  AL536_RS45515 - 543292..544644 (-) 1353 WP_225869402.1 hypothetical protein -
  AL536_RS25265 (AL536_02605) - 544641..545120 (-) 480 WP_061055524.1 hypothetical protein -
  AL536_RS25270 (AL536_02610) - 545102..546148 (-) 1047 WP_061055525.1 baseplate J/gp47 family protein -
  AL536_RS25275 (AL536_02615) - 546145..546531 (-) 387 WP_061055526.1 phage GP46 family protein -
  AL536_RS25280 (AL536_02620) - 546528..547103 (-) 576 WP_061055527.1 phage baseplate assembly protein V -
  AL536_RS25285 (AL536_02625) - 547096..548034 (-) 939 WP_061055528.1 hypothetical protein -
  AL536_RS25290 (AL536_02630) - 548031..549221 (-) 1191 WP_061055529.1 DNA circularization N-terminal domain-containing protein -
  AL536_RS45645 (AL536_22425) - 550007..550366 (-) 360 WP_038151570.1 terminase large subunit domain-containing protein -
  AL536_RS25310 (AL536_02640) - 550612..550863 (-) 252 WP_004726797.1 ogr/Delta-like zinc finger family protein -
  AL536_RS25315 (AL536_02645) - 550873..553503 (-) 2631 WP_061055531.1 replication endonuclease -
  AL536_RS25320 (AL536_02650) - 553547..553855 (+) 309 WP_061055532.1 hypothetical protein -
  AL536_RS25325 (AL536_02655) - 554045..554281 (-) 237 WP_061055533.1 hypothetical protein -
  AL536_RS25330 (AL536_02660) - 554263..554730 (-) 468 WP_061055534.1 DUF3850 domain-containing protein -
  AL536_RS25335 (AL536_02665) - 554727..555023 (-) 297 WP_044362472.1 hypothetical protein -
  AL536_RS25340 (AL536_02670) - 555096..555428 (-) 333 WP_004726788.1 hypothetical protein -
  AL536_RS25345 (AL536_02675) - 555438..555977 (-) 540 WP_061055535.1 phage regulatory CII family protein -
  AL536_RS25350 (AL536_02680) - 556035..556493 (-) 459 WP_004726785.1 hypothetical protein -
  AL536_RS25355 (AL536_02685) - 556641..557366 (+) 726 WP_047462994.1 phage repressor protein -
  AL536_RS25360 (AL536_02690) - 557431..557823 (-) 393 WP_061055536.1 hypothetical protein -
  AL536_RS25370 (AL536_02695) - 557974..558561 (-) 588 WP_061055537.1 hypothetical protein -
  AL536_RS25375 (AL536_02700) - 558659..559510 (-) 852 WP_162268965.1 hypothetical protein -
  AL536_RS25385 (AL536_02705) - 559581..560519 (-) 939 WP_061055539.1 hypothetical protein -
  AL536_RS25390 (AL536_02710) - 560826..561794 (+) 969 WP_061056067.1 tyrosine-type recombinase/integrase -
  AL536_RS25395 (AL536_02715) - 561956..562273 (-) 318 WP_020329287.1 DUF496 family protein -
  AL536_RS25400 (AL536_02720) - 562463..562660 (+) 198 WP_020329288.1 hypothetical protein -
  AL536_RS25405 (AL536_02725) - 562705..563340 (+) 636 WP_061055540.1 YceH family protein -
  AL536_RS25410 (AL536_02730) - 563351..563632 (+) 282 WP_047457986.1 GIY-YIG nuclease family protein -
  AL536_RS25415 (AL536_02735) - 563746..564903 (+) 1158 WP_061055541.1 conjugal transfer protein TraF -
  AL536_RS25420 (AL536_02740) luxP 565114..566211 (+) 1098 WP_024375537.1 autoinducer 2-binding periplasmic protein LuxP Regulator

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41555.79 Da        Isoelectric Point: 5.0163

>NTDB_id=167671 AL536_RS25420 WP_024375537.1 565114..566211(+) (luxP) [Vibrio fluvialis strain ATCC 33809]
MKKTLLLIVCLCFAPLAFAYSSQVLNGYWHYQEFLNANPQQKTLTESLSNAVRQSPARLNVKQSKPVTISVVYPGQQISD
YWIRNIKAFEMRLEELGIEYQINQVFTRPNLDMRQQSLSLMEALKNNTDYLIFTLDTTRHRKFIEHVLSSSPTKLILQNI
TTPVRDWDSRQPMMYVGFDHETGAQQLAQYYREHVPKGSKYSVLYFSEGYVSDARGDTFIQQMEGTGDYQLASSYYTKAT
QESGYEATLNILKNDPDIKFIYACSTDVALGAAQALQEQNREDIQVNGWGGGSAELEALNEGHLDVTVMRINDDTGIAMA
EAIKRDLEGEAVPVVYSGDFEIVTKEDSSQKIDVFKQRAFRYSDR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=167671 AL536_RS25420 WP_024375537.1 565114..566211(+) (luxP) [Vibrio fluvialis strain ATCC 33809]
ATGAAAAAAACACTACTACTTATAGTTTGCCTCTGTTTTGCTCCTTTAGCCTTTGCGTATTCGTCTCAAGTACTGAATGG
TTACTGGCATTATCAAGAGTTTCTGAATGCAAATCCGCAACAAAAGACGTTGACGGAGTCGCTTTCTAATGCGGTCAGAC
AATCGCCGGCAAGGCTGAATGTCAAACAAAGCAAGCCTGTGACCATTTCGGTCGTCTATCCGGGGCAGCAGATTTCAGAT
TACTGGATTCGCAACATTAAGGCGTTTGAGATGCGTCTGGAAGAGCTGGGGATTGAGTACCAAATCAATCAGGTTTTTAC
GCGGCCTAATCTGGATATGCGTCAGCAAAGCCTTTCTTTGATGGAAGCGCTGAAGAACAACACCGATTATCTGATCTTTA
CTCTCGATACCACCCGTCACCGCAAGTTTATCGAGCATGTTCTCAGTTCCTCGCCAACCAAATTGATTCTTCAGAATATC
ACTACTCCGGTCAGAGACTGGGATAGCCGTCAGCCGATGATGTATGTGGGCTTTGACCACGAAACCGGCGCGCAGCAACT
GGCGCAGTATTACCGCGAACACGTGCCTAAAGGCAGCAAATATTCCGTGCTGTATTTCTCTGAAGGCTACGTCAGCGACG
CACGTGGCGACACTTTTATTCAGCAGATGGAAGGCACTGGTGATTATCAGCTGGCCTCTTCTTACTACACCAAAGCTACT
CAGGAGAGTGGTTACGAAGCAACGCTTAACATTCTGAAAAACGATCCGGACATCAAATTTATTTATGCCTGTTCAACGGA
CGTGGCACTGGGTGCTGCGCAAGCGTTGCAAGAGCAGAATCGTGAAGACATTCAGGTGAACGGCTGGGGCGGTGGTTCGG
CAGAACTTGAAGCGCTGAATGAAGGGCATCTGGATGTGACCGTGATGCGCATCAACGACGATACGGGCATTGCAATGGCA
GAAGCCATCAAACGCGACCTTGAAGGCGAGGCGGTGCCAGTGGTCTATTCCGGCGACTTTGAGATTGTCACCAAAGAAGA
TAGTTCGCAGAAAATCGATGTATTTAAGCAACGGGCATTTCGTTATTCCGATCGTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

70.685

100

0.707

Multiple sequence alignment