Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | AL475_RS16680 | Genome accession | NZ_CP014033 |
| Coordinates | 1828597..1829187 (+) | Length | 196 a.a. |
| NCBI ID | WP_044362423.1 | Uniprot ID | - |
| Organism | Vibrio fluvialis strain FDAARGOS_100 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1823597..1834187
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL475_RS16665 (AL475_08705) | oxyR | 1824023..1824919 (+) | 897 | WP_020329438.1 | DNA-binding transcriptional regulator OxyR | - |
| AL475_RS16670 (AL475_08710) | - | 1824980..1827460 (-) | 2481 | WP_104966435.1 | penicillin-binding protein 1A | - |
| AL475_RS16675 (AL475_08715) | pilM | 1827603..1828607 (+) | 1005 | WP_104966436.1 | type IV pilus assembly protein PilM | Machinery gene |
| AL475_RS16680 (AL475_08720) | pilN | 1828597..1829187 (+) | 591 | WP_044362423.1 | PilN domain-containing protein | Machinery gene |
| AL475_RS16685 (AL475_08725) | pilO | 1829180..1829770 (+) | 591 | WP_104966437.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AL475_RS16690 (AL475_08730) | pilP | 1829760..1830272 (+) | 513 | WP_104966438.1 | pilus assembly protein PilP | Machinery gene |
| AL475_RS16695 (AL475_08735) | pilQ | 1830297..1832033 (+) | 1737 | WP_104966439.1 | type IV pilus secretin PilQ | Machinery gene |
| AL475_RS16700 (AL475_08740) | aroK | 1832221..1832739 (+) | 519 | WP_004728569.1 | shikimate kinase AroK | - |
| AL475_RS16705 (AL475_08745) | aroB | 1832767..1833852 (+) | 1086 | WP_044362429.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22289.66 Da Isoelectric Point: 8.9705
>NTDB_id=167658 AL475_RS16680 WP_044362423.1 1828597..1829187(+) (pilN) [Vibrio fluvialis strain FDAARGOS_100]
MLHNINLIPWREAQREAHKRRFVGLCVLALMVALGVQWGAGFYLDQQTQAQQQRLAFLNQHIHQLDAQIAELKVTEQEHK
ALLTRLNIVESLQQKRNKTTEFMDLMPQLIPEGVYVDKIKMNGEEIEISGISDSTARLATMLDNLEKSTQLSEVGMHSIV
SGNRRFGKQFQSFKVSFLFHASAHKPLTTVTGEKHG
MLHNINLIPWREAQREAHKRRFVGLCVLALMVALGVQWGAGFYLDQQTQAQQQRLAFLNQHIHQLDAQIAELKVTEQEHK
ALLTRLNIVESLQQKRNKTTEFMDLMPQLIPEGVYVDKIKMNGEEIEISGISDSTARLATMLDNLEKSTQLSEVGMHSIV
SGNRRFGKQFQSFKVSFLFHASAHKPLTTVTGEKHG
Nucleotide
Download Length: 591 bp
>NTDB_id=167658 AL475_RS16680 WP_044362423.1 1828597..1829187(+) (pilN) [Vibrio fluvialis strain FDAARGOS_100]
ATGCTGCATAACATCAACCTTATTCCCTGGCGTGAAGCGCAGCGCGAGGCGCACAAACGCCGCTTCGTCGGACTGTGCGT
GCTCGCGCTGATGGTGGCATTGGGCGTGCAGTGGGGCGCTGGCTTTTATCTCGATCAGCAAACTCAGGCTCAGCAGCAGC
GACTGGCATTTCTCAATCAGCACATTCACCAACTGGATGCGCAGATTGCCGAGCTGAAAGTGACCGAGCAAGAACATAAA
GCGTTGCTGACCCGGCTCAATATCGTCGAATCGTTACAGCAAAAACGCAATAAGACCACCGAATTCATGGACCTGATGCC
GCAGTTGATTCCGGAAGGTGTCTACGTCGACAAGATCAAAATGAACGGCGAAGAAATTGAAATCAGCGGCATCAGTGACA
GTACCGCCCGACTCGCCACCATGCTCGACAATCTGGAAAAATCCACCCAACTGTCTGAGGTCGGTATGCATTCGATCGTG
TCAGGTAATCGACGTTTTGGTAAACAATTTCAGAGCTTTAAGGTGTCATTTCTGTTTCATGCGTCAGCTCATAAGCCGCT
CACCACCGTGACAGGAGAGAAACATGGCTAA
ATGCTGCATAACATCAACCTTATTCCCTGGCGTGAAGCGCAGCGCGAGGCGCACAAACGCCGCTTCGTCGGACTGTGCGT
GCTCGCGCTGATGGTGGCATTGGGCGTGCAGTGGGGCGCTGGCTTTTATCTCGATCAGCAAACTCAGGCTCAGCAGCAGC
GACTGGCATTTCTCAATCAGCACATTCACCAACTGGATGCGCAGATTGCCGAGCTGAAAGTGACCGAGCAAGAACATAAA
GCGTTGCTGACCCGGCTCAATATCGTCGAATCGTTACAGCAAAAACGCAATAAGACCACCGAATTCATGGACCTGATGCC
GCAGTTGATTCCGGAAGGTGTCTACGTCGACAAGATCAAAATGAACGGCGAAGAAATTGAAATCAGCGGCATCAGTGACA
GTACCGCCCGACTCGCCACCATGCTCGACAATCTGGAAAAATCCACCCAACTGTCTGAGGTCGGTATGCATTCGATCGTG
TCAGGTAATCGACGTTTTGGTAAACAATTTCAGAGCTTTAAGGTGTCATTTCTGTTTCATGCGTCAGCTCATAAGCCGCT
CACCACCGTGACAGGAGAGAAACATGGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
68.817 |
94.898 |
0.653 |
| pilN | Vibrio campbellii strain DS40M4 |
61.224 |
100 |
0.612 |