Detailed information NTG0167657

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: AL475_RS16675
• Genome accession: NZ_CP014033
• Coordinates: 1827603..1828607 (+)
• Length: 334 a.a.
• NCBI ID: WP_104966436.1
• Uniprot ID: -
• Organism: Vibrio fluvialis strain FDAARGOS_100
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1822603..1833607

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL475_RS16655 (AL475_08695)	-	1822753..1823016 (-)	264	WP_020429299.1	DUF3624 domain-containing protein	-
AL475_RS16660 (AL475_08700)	-	1823145..1823879 (-)	735	WP_104966434.1	glutathione peroxidase	-
AL475_RS16665 (AL475_08705)	oxyR	1824023..1824919 (+)	897	WP_020329438.1	DNA-binding transcriptional regulator OxyR	-
AL475_RS16670 (AL475_08710)	-	1824980..1827460 (-)	2481	WP_104966435.1	penicillin-binding protein 1A	-
AL475_RS16675 (AL475_08715)	pilM	1827603..1828607 (+)	1005	WP_104966436.1	type IV pilus assembly protein PilM	Machinery gene
AL475_RS16680 (AL475_08720)	pilN	1828597..1829187 (+)	591	WP_044362423.1	PilN domain-containing protein	Machinery gene
AL475_RS16685 (AL475_08725)	pilO	1829180..1829770 (+)	591	WP_104966437.1	type 4a pilus biogenesis protein PilO	Machinery gene
AL475_RS16690 (AL475_08730)	pilP	1829760..1830272 (+)	513	WP_104966438.1	pilus assembly protein PilP	Machinery gene
AL475_RS16695 (AL475_08735)	pilQ	1830297..1832033 (+)	1737	WP_104966439.1	type IV pilus secretin PilQ	Machinery gene
AL475_RS16700 (AL475_08740)	aroK	1832221..1832739 (+)	519	WP_004728569.1	shikimate kinase AroK	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36759.04 Da
• Isoelectric Point: 6.6959

>NTDB_id=167657 AL475_RS16675 WP_104966436.1 1827603..1828607(+) (pilM) [Vibrio fluvialis strain FDAARGOS_100]
MGKSLVTGVDIGHHSIKAVVLKPKGESYSLVGYQEIVLSEDIFADNHTLNYQKIVKKLKELKKGLPLFSRKVALAVPDNA
VISKVLQIDSELDASEQEFAVYQAFSHQSPLPIEELSLDFVATGEKTLGRSSSLTYQVYATRREVIDNRLSAVSKAGFEP
LLFDMQIHGLLNIWQWVSRAQQRTDWMLVDVGFSQTSLCIDFADKAPFYKDIPLGTRQLVAATSGGNADLTSPQAHFIQD
LVERLARQIQLFLSLQGHQPLAGIWLSGGGAATEGLAQAISERLALPCELFNPLAEFTCRASLRRQPQADLQRFSTAAGL
ALRGLNWLENGHAA

Nucleotide

• Length: 1005 bp

>NTDB_id=167657 AL475_RS16675 WP_104966436.1 1827603..1828607(+) (pilM) [Vibrio fluvialis strain FDAARGOS_100]
ATGGGTAAATCATTAGTTACAGGTGTCGATATTGGCCACCACAGTATTAAAGCGGTGGTTTTAAAACCGAAAGGCGAATC
GTATTCGCTGGTCGGTTACCAAGAGATAGTCTTATCCGAGGATATTTTCGCTGATAACCACACGCTGAATTATCAGAAAA
TTGTAAAGAAACTCAAAGAACTAAAAAAGGGATTACCGCTATTTAGTCGTAAAGTGGCGCTGGCTGTACCGGACAACGCA
GTAATAAGTAAGGTATTACAGATAGATAGCGAACTGGATGCCAGCGAACAAGAGTTCGCGGTCTATCAGGCTTTTTCCCA
TCAATCGCCGCTACCCATCGAAGAGTTGAGCCTGGATTTCGTTGCTACCGGAGAAAAAACACTGGGGCGCAGCAGTTCGT
TGACGTATCAGGTCTATGCAACCCGACGTGAAGTGATCGACAACCGTTTGTCTGCGGTGAGCAAAGCGGGTTTTGAGCCG
CTGCTGTTTGATATGCAGATTCACGGCTTACTCAATATCTGGCAATGGGTCAGTCGTGCTCAGCAACGCACCGATTGGAT
GCTGGTCGATGTCGGGTTCAGCCAAACCTCATTGTGCATCGACTTTGCCGACAAAGCGCCGTTTTACAAAGACATTCCGT
TGGGAACCCGCCAACTGGTTGCGGCGACCTCCGGTGGTAACGCTGACCTTACCAGCCCGCAAGCACACTTCATTCAGGAT
TTGGTTGAGCGTCTGGCGCGCCAGATCCAACTGTTTCTTTCTCTGCAAGGCCATCAACCGCTGGCTGGTATCTGGCTATC
CGGTGGCGGCGCGGCAACGGAAGGTTTGGCGCAGGCGATTAGCGAACGTCTGGCTCTGCCTTGCGAGCTGTTTAACCCTC
TGGCGGAGTTTACTTGCCGCGCATCGCTACGCCGCCAGCCTCAGGCTGATTTGCAGCGTTTCAGTACTGCGGCAGGCTTG
GCGCTGCGCGGCCTGAATTGGCTGGAGAACGGCCATGCTGCATAA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (237-324)

• Type IV pilus assembly protein PilM; (PilM_2) (8-219)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Vibrio cholerae strain A1552	65.089	100	0.659
pilM	Vibrio campbellii strain DS40M4	48.696	100	0.503