Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   A4W86_RS05490 Genome accession   NZ_CP017272
Coordinates   1098625..1100070 (-) Length   481 a.a.
NCBI ID   WP_056936413.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.1239     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1093625..1105070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W86_RS05465 (A4W86_05430) - 1093791..1094066 (-) 276 WP_011374717.1 HU family DNA-binding protein -
  A4W86_RS05470 (A4W86_05435) der 1094273..1095583 (-) 1311 WP_016265173.1 ribosome biogenesis GTPase Der -
  A4W86_RS05475 (A4W86_05440) rpsA 1095817..1097028 (-) 1212 WP_025015758.1 30S ribosomal protein S1 -
  A4W86_RS05480 (A4W86_05445) cmk 1097123..1097782 (-) 660 WP_025015757.1 (d)CMP kinase -
  A4W86_RS05485 (A4W86_05450) - 1097849..1098556 (-) 708 WP_025015756.1 LysM domain-containing protein -
  A4W86_RS05490 (A4W86_05455) recS 1098625..1100070 (-) 1446 WP_056936413.1 RecQ family ATP-dependent DNA helicase Machinery gene
  A4W86_RS05495 (A4W86_05460) - 1100067..1101095 (-) 1029 WP_025015755.1 helix-turn-helix domain-containing protein -
  A4W86_RS05500 (A4W86_05465) - 1101132..1101362 (+) 231 WP_016265179.1 ferredoxin -
  A4W86_RS05505 (A4W86_05470) - 1101438..1102013 (-) 576 WP_016265180.1 ECF transporter S component -
  A4W86_RS05510 (A4W86_05475) - 1102329..1103099 (-) 771 WP_011374726.1 pseudouridine synthase -
  A4W86_RS05515 (A4W86_05480) scpB 1103102..1103725 (-) 624 WP_076645129.1 SMC-Scp complex subunit ScpB -
  A4W86_RS05520 (A4W86_05485) - 1103709..1104464 (-) 756 WP_025015753.1 segregation/condensation protein A -
  A4W86_RS05525 (A4W86_05490) - 1104473..1104841 (-) 369 WP_025015752.1 hypothetical protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 54580.37 Da        Isoelectric Point: 5.2839

>NTDB_id=167646 A4W86_RS05490 WP_056936413.1 1098625..1100070(-) (recS) [Latilactobacillus sakei strain TMW 1.1239]
MTSEQLIYDQLAQHFGYSTFKPGQLAVIQSVLAGQETLAVLPTGTGKSLCYQLPAYILGHTTVIVSPLIALMQDQVAQLN
YQGEKRAVAINSNLVPQQKYQLLTHLADYRFIFMAPETISQPEVIQALQRCQIDLFVVDEAHCISQWGIDFRPDYLVLAT
IKAQLRPTATLALTATANDRVRQDILNKLALKNAAQIMTSVDRPNIYLGVSQQPDEQAKNQFLASLVQKSQGPGIIYFSS
RQKTMEIAAFLQQETDLKIAYYHAALSTQERYLIQQQFMQGQLDLICTTNAFGMGINKADIRYVIHYHLPQNIESYLQEI
GRAGRDGQPAYALVLTTPQDLYLQQSLVSFGIPEPGLIRRYYQEPQLFKQSQGNEFELLRRYQQLGMTEEEVIKLLDNRQ
TEKQFSLQTMLDYLTLKGCRRQFIVNYFDQAPKTIEHSETCCGEQDSTDFLAQLDLEQAINYKTAETVVLTGWTGILDQL
F

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=167646 A4W86_RS05490 WP_056936413.1 1098625..1100070(-) (recS) [Latilactobacillus sakei strain TMW 1.1239]
ATGACTTCTGAACAACTCATTTATGACCAGTTAGCGCAGCACTTTGGCTATTCAACCTTTAAACCGGGCCAGTTAGCGGT
TATTCAGTCGGTACTTGCTGGGCAGGAGACATTAGCCGTTTTACCAACTGGGACTGGGAAGTCGCTGTGTTATCAATTAC
CGGCCTATATCTTGGGGCATACGACTGTGATTGTCTCGCCACTAATCGCATTAATGCAAGATCAGGTCGCCCAATTGAAT
TACCAAGGGGAAAAGCGAGCTGTCGCCATTAATTCTAATTTAGTGCCTCAGCAAAAATACCAGTTGTTGACGCATTTAGC
GGACTACCGCTTTATTTTTATGGCACCGGAGACTATCAGTCAACCGGAAGTGATTCAAGCGCTCCAACGTTGCCAAATTG
ATTTATTTGTGGTTGATGAGGCCCATTGTATTTCACAATGGGGGATTGATTTTAGACCGGACTATTTAGTTTTAGCAACC
ATCAAGGCCCAATTGCGGCCAACCGCAACATTGGCTTTGACGGCAACTGCCAATGATCGTGTACGCCAAGATATTTTGAA
TAAGTTGGCGTTAAAAAACGCGGCCCAAATCATGACCTCTGTTGATCGCCCCAATATCTATTTGGGCGTGAGCCAACAAC
CTGATGAACAAGCAAAGAATCAATTTTTAGCCAGCTTAGTGCAAAAAAGCCAAGGTCCCGGGATTATTTATTTTTCAAGT
CGGCAAAAGACGATGGAGATTGCGGCCTTTTTGCAGCAAGAAACTGATCTGAAGATTGCGTATTACCACGCGGCGTTATC
AACCCAGGAGCGGTATTTGATTCAACAACAATTTATGCAAGGACAACTTGATTTGATTTGTACAACCAATGCTTTTGGGA
TGGGGATTAATAAGGCGGATATTCGCTATGTGATTCATTATCACCTGCCACAAAACATCGAAAGTTACTTGCAAGAAATC
GGACGGGCAGGTCGAGATGGGCAACCAGCCTATGCTTTAGTCCTAACAACTCCGCAAGATTTATATTTACAACAATCACT
CGTTTCATTTGGAATTCCGGAACCAGGCCTCATTCGGCGCTATTATCAGGAACCGCAATTATTTAAACAAAGTCAAGGCA
ATGAATTTGAACTACTACGTCGCTACCAGCAACTGGGGATGACCGAAGAAGAGGTCATTAAGTTATTGGATAATCGTCAA
ACCGAAAAGCAGTTTTCACTACAAACGATGCTGGATTATTTGACCCTCAAGGGCTGTCGACGGCAATTTATTGTGAACTA
TTTTGACCAGGCACCAAAGACGATTGAACACAGCGAAACGTGTTGCGGGGAACAGGATTCGACCGACTTTTTAGCACAAT
TAGACTTAGAACAGGCTATTAATTATAAAACCGCTGAAACCGTTGTTCTGACTGGTTGGACGGGAATCTTGGACCAATTA
TTTTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(220-326)

DEAD/DEAH box helicase (DEAD)

(22-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

42.257

93.971

0.397

Multiple sequence alignment