Detailed information NTG0167643

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AL475_RS12960
• Genome accession: NZ_CP014033
• Coordinates: 1074568..1075554 (-)
• Length: 328 a.a.
• NCBI ID: WP_020429689.1
• Uniprot ID: A0AAX2LR86
• Organism: Vibrio fluvialis strain FDAARGOS_100
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1069568..1080554

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL475_RS12940 (AL475_04980)	recX	1069612..1070070 (-)	459	WP_044365873.1	recombination regulator RecX	-
AL475_RS12945 (AL475_04985)	recA	1070140..1071192 (-)	1053	WP_104966139.1	recombinase RecA	Machinery gene
AL475_RS12950 (AL475_04990)	pncC	1071365..1071853 (-)	489	WP_020330432.1	nicotinamide-nucleotide amidase	-
AL475_RS12955 (AL475_04995)	mutS	1071938..1074499 (+)	2562	WP_104966140.1	DNA mismatch repair protein MutS	-
AL475_RS12960 (AL475_05000)	rpoS	1074568..1075554 (-)	987	WP_020429689.1	RNA polymerase sigma factor RpoS	Regulator
AL475_RS12965 (AL475_05005)	nlpD	1075626..1076561 (-)	936	WP_075988940.1	murein hydrolase activator NlpD	-
AL475_RS12970 (AL475_05010)	-	1076561..1077187 (-)	627	WP_104966141.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AL475_RS12975 (AL475_05015)	surE	1077180..1077947 (-)	768	WP_020330427.1	5'/3'-nucleotidase SurE	-
AL475_RS12980 (AL475_05020)	truD	1077940..1078986 (-)	1047	WP_104966142.1	tRNA pseudouridine(13) synthase TruD	-
AL475_RS12985 (AL475_05025)	ispF	1079018..1079494 (-)	477	WP_020330425.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AL475_RS12990 (AL475_05030)	ispD	1079497..1080207 (-)	711	WP_044365888.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AL475_RS12995 (AL475_05035)	ftsB	1080204..1080485 (-)	282	WP_020330423.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37678.46 Da
• Isoelectric Point: 4.4184

>NTDB_id=167643 AL475_RS12960 WP_020429689.1 1074568..1075554(-) (rpoS) [Vibrio fluvialis strain FDAARGOS_100]
MSISNTATKVEEFDFDPETANLAEVEEELATNNDQSEEIREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNSD
PEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNME
SLFNVEND

Nucleotide

• Length: 987 bp

>NTDB_id=167643 AL475_RS12960 WP_020429689.1 1074568..1075554(-) (rpoS) [Vibrio fluvialis strain FDAARGOS_100]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGATTTTGATCCTGAAACAGCGAATCTTGCTGAGGTCGAAGA
AGAACTTGCTACCAATAATGACCAGTCAGAAGAGATTCGTGAAGAGTTTGACGCTTCAACGAAAAGTCTCGATGCAACTC
AGATGTATCTGAGTGAGATTGGTTTCTCACCACTATTAACCGCCGAAGAAGAAGTGCTCTACGCTCGCCGTGCTCTGCGT
GGCGATGAAGCTGCGCGCAAACGCATGATCGAGAGTAACTTACGTCTGGTGGTCAAGATTTCCCGCCGTTATAGCAATCG
TGGTCTGGCACTGCTTGATCTGATTGAAGAGGGTAACCTCGGTCTGATTCGCGCGGTAGAGAAATTCGACCCAGAACGCG
GTTTCCGTTTTTCGACTTACGCCACCTGGTGGATTCGTCAGACCATTGAACGTGCGCTGATGAACCAAACCCGCACCATT
CGTTTACCGATTCATGTGGTGAAAGAGCTGAATATTTACCTGCGTACCGCACGTGAACTGTCTCAGAAACTGGACCACGA
ACCAACCGCAGAAGAAATAGCGGTTGAACTGGATAAGCCAGTCGACGATGTCAGCAAAATGCTGCGCCTGAATGAGCGCA
TCAGCTCTGTGGACACTCCGATTGGTGGTGACGGTGATAAAGCGCTGTTGGATATCATTCCGGACATCAACAACTCTGAC
CCTGAAGTCTCCACGCAAGATGACGACATTCGTGATTCGCTGGTGGCTTGGCTGGATGAGCTCAATCCAAAACAGAAAGA
AGTGCTGGCACGCCGCTTTGGTTTGTTGGGCTATGAACCTTCTACGCTGGAAGAAGTGGGCCGCGAGATTAATCTGACTC
GTGAACGTGTACGCCAAATTCAGGTTGAGGGTCTGCGCCGTCTGAGAGAGATCCTGATGAAACAAGGCCTGAACATGGAA
TCGCTGTTCAACGTGGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	87.126	100	0.887