Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AL475_RS08910 Genome accession   NZ_CP014033
Coordinates   200118..201542 (+) Length   474 a.a.
NCBI ID   WP_104965793.1    Uniprot ID   -
Organism   Vibrio fluvialis strain FDAARGOS_100     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 195118..206542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL475_RS08885 (AL475_00925) cobT 195286..196314 (-) 1029 WP_104965789.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  AL475_RS08890 (AL475_00930) - 196328..196939 (-) 612 WP_104965790.1 flavin reductase family protein -
  AL475_RS08895 (AL475_00935) - 197324..198007 (+) 684 WP_104965791.1 NAD(P)H-binding protein -
  AL475_RS08900 (AL475_00940) - 198208..199587 (+) 1380 WP_032081664.1 L-cystine transporter -
  AL475_RS08905 (AL475_00945) - 199668..199880 (-) 213 WP_146106755.1 hypothetical protein -
  AL475_RS08910 (AL475_00950) sbcB 200118..201542 (+) 1425 WP_104965793.1 exodeoxyribonuclease I Machinery gene
  AL475_RS08915 (AL475_00955) - 201575..201949 (+) 375 WP_104966942.1 CidA/LrgA family protein -
  AL475_RS08920 (AL475_00960) - 201940..202620 (+) 681 WP_104965794.1 LrgB family protein -
  AL475_RS08925 (AL475_00965) cdd 202822..203709 (+) 888 WP_032081869.1 cytidine deaminase -
  AL475_RS08930 (AL475_00970) - 203756..206470 (-) 2715 WP_104965795.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54426.87 Da        Isoelectric Point: 5.1493

>NTDB_id=167629 AL475_RS08910 WP_104965793.1 200118..201542(+) (sbcB) [Vibrio fluvialis strain FDAARGOS_100]
MQQQHQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPADYLPAPEAALITGIIPQKAMAQGLPEP
EFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGIVWPENDEGFT
SFKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVADLAKDPQPLIDLDVDALHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAA
TIGIDRELCLANLARIRQHPEIREKLAALFGIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTKPELLGELDITFSDK
RIDPLLFRYRARNFPWTLDENDQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=167629 AL475_RS08910 WP_104965793.1 200118..201542(+) (sbcB) [Vibrio fluvialis strain FDAARGOS_100]
ATGCAGCAGCAACACCAGCCAACTTATTTCTTCTTTGACTACGAGACGTGGGGCACCAGTCCGGCCAAAGATCGTCCGAG
TCAGTTTGCTGGTGTACGCACAGACATGGATTTCAACATCATTGGCGAGCCTTTGGTGATCTATTGCCAACTGCCAGCGG
ATTATCTGCCAGCGCCAGAAGCCGCGCTGATCACTGGCATCATTCCACAAAAAGCGATGGCACAAGGGCTACCTGAGCCG
GAGTTTATTGCCAAAATTCACGCGGAACTGTCGACACCCAACACCACCAGCCTGGGTTACAACAGCATTCGTTTCGACGA
TGAAGTGACACGTTATACCTGCTATCGCAACTTTCTCGATCCGTATGCCTGGAGCTGGCAAAACGGCAACTCACGTTGGG
ATCTGCTTGATGTGATGCGTGCCTGTCATGCGCTGCGCCCAGAAGGTATTGTGTGGCCGGAAAACGACGAAGGCTTTACC
AGCTTTAAACTGGAGCATTTGTCGAAAGCCAACGGCATTGAACACGAAAATGCGCATGATGCGATGGCCGACGTGATTGC
GACCATTGAACTGGCGAAAAAAGTCAAAGCGGCGCAACCCAAACTGTTCGATTACTTCTTCTCTATGCGCCATAAGCGCA
AACTGAATGAACTGATTGATATCGTCAACATGACGCCGCTGATGCACGTGTCCGGCATGCTGGGTCGCGAGTGTCAATAC
ACCAGTTGGATTGTGCCGATAGCCTGGCACCCAACCAATCAGAACGCCGTGATTGTGGCTGATTTGGCCAAAGATCCACA
GCCGCTGATCGACTTAGATGTGGACGCTCTGCATGCACGTCTATATACCCGTCACGATGATTTAGCACCGGATGAACTGC
CTGTGCCTGTCAAACTGGTTCATCTCAATAAATGCCCGATTCTGGCACCGGCGAAAACGCTGACCGCAGAAAATGCCGCC
ACCATCGGTATTGATCGCGAATTGTGTCTGGCGAATCTGGCTCGCATTCGTCAGCATCCAGAAATTCGAGAGAAGCTGGC
CGCCCTCTTTGGCATTGAAAGAGAATTTGAAGCATCGAACGATGTTGATACACAGCTCTATGACGGATTCTTCTCACCTG
CGGATAAAGCGGCGATGGAGATCATCCGTTCGACCAAACCTGAGCTGCTTGGCGAGCTGGATATTACCTTCAGCGATAAG
CGCATCGATCCGCTGCTGTTTCGCTATCGCGCACGTAATTTCCCTTGGACGCTGGATGAAAATGACCAGCGTCGCTGGGC
GAACCATTGCCGCGACTACTACGAAACACACCTGCCAGATTACATGCTGAATCTGGAAAACTTAGTTCATGAACATGAAA
GTGACGAAAAGAAAATCGCCATTTTAAAATCCGTTTACCAATACGTAGAGAAGCTAGCTTCTTAG

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

83.298

99.789

0.831

Multiple sequence alignment