Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   A4W86_RS02970 Genome accession   NZ_CP017272
Coordinates   603089..603673 (-) Length   194 a.a.
NCBI ID   WP_025016311.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.1239     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 598089..608673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W86_RS02940 (A4W86_02915) - 598154..598690 (+) 537 WP_016264747.1 DUF308 domain-containing protein -
  A4W86_RS02945 (A4W86_02920) rapZ 598816..599700 (+) 885 WP_011374234.1 RNase adapter RapZ -
  A4W86_RS02950 (A4W86_02925) - 599697..600731 (+) 1035 WP_016264749.1 YvcK family protein -
  A4W86_RS02955 (A4W86_02930) whiA 600734..601678 (+) 945 WP_011374236.1 DNA-binding protein WhiA -
  A4W86_RS02960 (A4W86_02935) - 601770..602225 (+) 456 WP_035146456.1 MarR family transcriptional regulator -
  A4W86_RS02965 (A4W86_02940) - 602340..602864 (-) 525 WP_025016312.1 DsbA family protein -
  A4W86_RS02970 (A4W86_02945) clpP 603089..603673 (-) 585 WP_025016311.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  A4W86_RS02975 (A4W86_02950) - 604217..604798 (-) 582 WP_025016310.1 glycoside hydrolase family 73 protein -
  A4W86_RS02980 (A4W86_02955) - 605013..605972 (+) 960 WP_025016309.1 nucleoside hydrolase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21244.27 Da        Isoelectric Point: 4.6805

>NTDB_id=167629 A4W86_RS02970 WP_025016311.1 603089..603673(-) (clpP) [Latilactobacillus sakei strain TMW 1.1239]
MLVPTVIEQTSRGERAYDIYSRLLKDRIIMLSGEVNDQMANTIIAQLLFLDAQDSDKDISIYINSPGGSVTAGLAIMDTM
NFIKSDVQTIAMGMAASMASVLLSAGTKGKRFALPNSTVLIHQPLGGAQGQQTEIEIAAREILKTRKRLNQILADNSGQS
FEKLQADTDRDNYMTAQEAKDYGLIDDIMVNQPK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=167629 A4W86_RS02970 WP_025016311.1 603089..603673(-) (clpP) [Latilactobacillus sakei strain TMW 1.1239]
ATGTTAGTACCGACAGTTATCGAACAAACATCTCGTGGCGAACGCGCCTACGATATTTACTCTCGTTTACTAAAAGACCG
GATCATCATGTTATCTGGTGAAGTAAACGACCAAATGGCTAACACAATCATTGCGCAATTACTATTCTTGGATGCGCAAG
ATTCAGATAAGGATATTTCAATCTACATCAACTCACCTGGTGGTTCTGTGACAGCCGGTTTGGCAATCATGGATACAATG
AACTTCATTAAATCTGATGTTCAAACAATCGCTATGGGCATGGCTGCTTCAATGGCCAGCGTTTTACTTTCAGCTGGGAC
AAAAGGCAAACGTTTTGCATTGCCTAACTCAACAGTCTTGATTCACCAACCTTTAGGTGGTGCACAAGGTCAACAAACTG
AAATTGAAATCGCAGCTCGCGAAATTTTGAAGACTCGGAAACGTTTGAACCAAATCTTGGCAGATAATTCTGGTCAAAGC
TTCGAAAAATTACAAGCAGACACTGATCGTGATAACTACATGACAGCCCAAGAAGCAAAAGATTACGGTTTGATTGACGA
CATTATGGTTAACCAACCAAAATAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(12-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

71.354

98.969

0.706
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

69.271

98.969

0.686
  clpP Streptococcus pneumoniae D39

68.229

98.969

0.675
  clpP Streptococcus pneumoniae R6

68.229

98.969

0.675
  clpP Streptococcus pneumoniae TIGR4

68.229

98.969

0.675
  clpP Streptococcus thermophilus LMD-9

68.229

98.969

0.675
  clpP Streptococcus thermophilus LMG 18311

68.229

98.969

0.675
  clpP Streptococcus pneumoniae Rx1

68.229

98.969

0.675
  clpP Bacillus subtilis subsp. subtilis str. 168

66.842

97.938

0.655
  clpP Streptococcus mutans UA159

65.625

98.969

0.649
  clpP Streptococcus pyogenes JRS4

64.583

98.969

0.639
  clpP Streptococcus pyogenes MGAS315

64.583

98.969

0.639
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.021

97.423

0.624

Multiple sequence alignment