Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   AL475_RS06015 Genome accession   NZ_CP014032
Coordinates   1315011..1316192 (+) Length   393 a.a.
NCBI ID   WP_104965432.1    Uniprot ID   -
Organism   Vibrio fluvialis strain FDAARGOS_100     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1310011..1321192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL475_RS06000 (AL475_20980) - 1310810..1311799 (-) 990 WP_104965431.1 GTP-binding protein -
  AL475_RS06005 (AL475_20985) clcA 1312274..1313671 (+) 1398 WP_020328471.1 H(+)/Cl(-) exchange transporter ClcA -
  AL475_RS06010 (AL475_20990) - 1313836..1314792 (+) 957 WP_044364423.1 TDT family transporter -
  AL475_RS06015 (AL475_20995) cqsA 1315011..1316192 (+) 1182 WP_104965432.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  AL475_RS06020 (AL475_21000) cqsS 1316228..1318276 (-) 2049 WP_104965433.1 hybrid sensor histidine kinase/response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43583.51 Da        Isoelectric Point: 6.7316

>NTDB_id=167627 AL475_RS06015 WP_104965432.1 1315011..1316192(+) (cqsA) [Vibrio fluvialis strain FDAARGOS_100]
MKTDAKNNRLPEFIQDRLNFFVRDLIQSNNNGKHLVLGKRPSQGDIVLQSNDYLSLANHPLIRARLKKAIDDTHDSVFMS
AIFLQDDESKPSLEYQLAEFAHFDSCLLSQSGWNANTALLQTICAPGSNVYIDFFAHMSMWEGARYANATIHPFMHNNCD
HLLKQIKRHGPGIIVVDSIYSTIGTIAPLAELVAIAKETGSAILVDESHSLGTHGKNGAGLLAELGLSDQVDFMTASLAK
TFAYRAGVIWANNNVNQCVPFVGYPAIFSSTILPYEIAALEATLDVIKSADERRERLFHNTHILSTGLNRLGINIRSQSQ
IIALETGDERNTEKVRDYLEYNGIFGAVFCRPATSKTKNIIRLSLTSAVTAEQIDHILSVCQNAVNRSDLYFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=167627 AL475_RS06015 WP_104965432.1 1315011..1316192(+) (cqsA) [Vibrio fluvialis strain FDAARGOS_100]
ATGAAAACTGATGCCAAAAATAATCGGTTACCTGAGTTTATTCAGGACCGTTTAAATTTCTTCGTTCGCGATTTAATTCA
AAGTAATAACAACGGTAAACATCTGGTATTAGGTAAACGCCCTTCACAAGGCGATATTGTTTTACAAAGCAACGATTACC
TCAGTCTGGCTAACCATCCGTTGATTCGTGCGCGTTTGAAAAAGGCCATCGACGATACACATGACAGCGTCTTTATGTCG
GCGATTTTCCTGCAGGATGATGAGTCGAAACCAAGCCTGGAATATCAACTGGCAGAGTTCGCACACTTTGATTCCTGCCT
GCTGTCGCAATCAGGCTGGAATGCCAATACCGCTTTGCTGCAAACCATCTGCGCGCCGGGAAGTAATGTCTATATTGACT
TCTTTGCTCATATGTCGATGTGGGAAGGCGCTCGTTACGCGAATGCCACTATTCATCCGTTTATGCACAACAACTGCGAC
CATTTACTTAAGCAGATAAAACGCCATGGCCCAGGAATTATCGTCGTCGATTCAATCTACAGCACCATTGGCACCATCGC
GCCGTTAGCTGAATTAGTCGCTATCGCTAAAGAGACCGGCAGCGCTATTCTAGTTGATGAATCGCACTCTCTTGGCACCC
ACGGTAAGAATGGCGCAGGTTTACTGGCAGAGTTAGGCTTATCTGATCAAGTGGATTTTATGACTGCGAGCCTGGCGAAA
ACGTTTGCTTATCGGGCGGGAGTTATCTGGGCAAATAATAACGTCAATCAGTGCGTTCCATTCGTGGGTTATCCGGCGAT
ATTCAGCTCAACAATTTTACCTTATGAAATTGCAGCTCTCGAAGCAACGCTGGATGTGATTAAATCCGCTGATGAACGAC
GTGAGCGTTTATTTCATAATACACATATATTGTCTACGGGATTAAATAGACTTGGTATTAATATTCGCAGTCAATCGCAA
ATAATAGCGTTAGAAACTGGAGATGAAAGAAATACAGAAAAAGTCCGCGATTATTTAGAATATAACGGTATTTTTGGCGC
AGTATTTTGCCGACCAGCTACATCGAAAACTAAGAATATTATTCGCTTGTCATTAACCAGTGCTGTCACCGCTGAACAGA
TCGACCATATTTTATCGGTCTGCCAAAATGCGGTAAACAGAAGCGACCTTTACTTTAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

70.13

97.964

0.687

Multiple sequence alignment