Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   AL475_RS04505 Genome accession   NZ_CP014032
Coordinates   960370..961467 (+) Length   365 a.a.
NCBI ID   WP_020329292.1    Uniprot ID   -
Organism   Vibrio fluvialis strain FDAARGOS_100     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 918152..960158 960370..961467 flank 212


Gene organization within MGE regions


Location: 918152..961467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL475_RS04215 (AL475_19195) - 918152..920038 (-) 1887 WP_104965231.1 hypothetical protein -
  AL475_RS23215 (AL475_19200) - 920067..920174 (-) 108 WP_075990070.1 GpE family phage tail protein -
  AL475_RS04225 (AL475_19205) - 920210..920497 (-) 288 WP_104965232.1 phage tail assembly protein -
  AL475_RS04230 (AL475_19210) gpM 920481..921188 (-) 708 WP_104965233.1 phage terminase small subunit -
  AL475_RS04235 (AL475_19215) - 921199..921564 (-) 366 WP_004726844.1 phage tail tube protein -
  AL475_RS04240 (AL475_19220) - 921568..922701 (-) 1134 WP_104965234.1 phage tail sheath subtilisin-like domain-containing protein -
  AL475_RS04245 (AL475_19225) - 922698..922880 (-) 183 WP_104965235.1 DUF2635 domain-containing protein -
  AL475_RS04250 (AL475_19230) - 922881..923420 (-) 540 WP_104965236.1 phage virion morphogenesis protein -
  AL475_RS04255 (AL475_19235) - 923417..923881 (-) 465 WP_104965237.1 phage tail protein -
  AL475_RS04260 (AL475_19240) - 923881..924330 (-) 450 WP_104965238.1 head completion/stabilization protein -
  AL475_RS04265 (AL475_19245) - 924439..925476 (-) 1038 WP_104965239.1 phage major capsid protein, P2 family -
  AL475_RS04270 (AL475_19250) - 925519..926337 (-) 819 WP_104965240.1 GPO family capsid scaffolding protein -
  AL475_RS04275 (AL475_19255) - 926508..928232 (+) 1725 WP_104965241.1 terminase large subunit domain-containing protein -
  AL475_RS04280 (AL475_19260) - 928243..929208 (+) 966 WP_104965242.1 phage portal protein -
  AL475_RS04285 (AL475_19265) - 929696..930532 (+) 837 WP_104965243.1 hypothetical protein -
  AL475_RS04290 (AL475_19270) - 930669..931352 (+) 684 WP_104965244.1 hypothetical protein -
  AL475_RS22955 - 931427..931690 (+) 264 WP_146106751.1 hypothetical protein -
  AL475_RS04300 (AL475_19280) - 931949..932566 (-) 618 WP_104965245.1 KilA-N domain-containing protein -
  AL475_RS04305 (AL475_19285) - 933101..933442 (+) 342 WP_192945761.1 SH3 domain-containing protein -
  AL475_RS04310 (AL475_19290) - 933591..934130 (+) 540 WP_104965247.1 GNAT family N-acetyltransferase -
  AL475_RS04315 (AL475_19295) - 934165..934596 (+) 432 WP_081381516.1 GFA family protein -
  AL475_RS04320 (AL475_19300) - 934747..935181 (+) 435 WP_055452445.1 hypothetical protein -
  AL475_RS04325 (AL475_19305) - 935258..935509 (-) 252 WP_104965249.1 hypothetical protein -
  AL475_RS04330 (AL475_19310) - 935500..935730 (-) 231 WP_004726817.1 hypothetical protein -
  AL475_RS04335 (AL475_19315) - 935741..936157 (-) 417 WP_104965250.1 glycoside hydrolase family protein -
  AL475_RS04340 (AL475_19320) - 936319..936966 (+) 648 WP_206384317.1 acyltransferase -
  AL475_RS04345 (AL475_19325) - 937050..937613 (-) 564 WP_104965251.1 hypothetical protein -
  AL475_RS04350 (AL475_19330) - 937606..938616 (-) 1011 WP_104965252.1 hypothetical protein -
  AL475_RS04355 (AL475_19335) - 938613..939143 (-) 531 WP_104965253.1 hypothetical protein -
  AL475_RS04360 (AL475_19340) - 939125..940171 (-) 1047 WP_104965254.1 baseplate J/gp47 family protein -
  AL475_RS04365 (AL475_19345) - 940168..940554 (-) 387 WP_104965255.1 phage GP46 family protein -
  AL475_RS04370 (AL475_19350) - 940551..941126 (-) 576 WP_104965256.1 phage baseplate assembly protein V -
  AL475_RS04375 (AL475_19355) - 941119..942057 (-) 939 WP_104965257.1 phage tail protein -
  AL475_RS04380 (AL475_19360) - 942054..943244 (-) 1191 WP_104965258.1 DNA circularization N-terminal domain-containing protein -
  AL475_RS23245 (AL475_19370) - 944030..944389 (-) 360 WP_038151570.1 terminase large subunit domain-containing protein -
  AL475_RS04400 (AL475_19380) - 944635..944886 (-) 252 WP_004726797.1 ogr/Delta-like zinc finger family protein -
  AL475_RS04405 (AL475_19385) - 944896..947526 (-) 2631 WP_104965259.1 replication endonuclease -
  AL475_RS04410 (AL475_19390) - 947543..948085 (-) 543 WP_104965260.1 DNA methyltransferase -
  AL475_RS04415 (AL475_19395) - 948082..948378 (-) 297 WP_044362472.1 hypothetical protein -
  AL475_RS04420 (AL475_19400) - 948451..948783 (-) 333 WP_104965261.1 hypothetical protein -
  AL475_RS04425 (AL475_19405) - 948793..949332 (-) 540 WP_014257423.1 phage regulatory CII family protein -
  AL475_RS04430 (AL475_19410) - 949390..949848 (-) 459 WP_004726785.1 hypothetical protein -
  AL475_RS04435 (AL475_19415) - 949999..950724 (+) 726 WP_171934179.1 S24 family peptidase -
  AL475_RS04440 (AL475_19420) - 950801..951835 (+) 1035 WP_192945762.1 nucleoid-associated protein -
  AL475_RS04445 (AL475_19425) - 951838..953373 (+) 1536 WP_104965263.1 hypothetical protein -
  AL475_RS23250 (AL475_19430) - 953544..954356 (-) 813 WP_192945763.1 endonuclease NucS domain-containing protein -
  AL475_RS04460 (AL475_19440) - 954515..954934 (-) 420 WP_104965265.1 hypothetical protein -
  AL475_RS04470 (AL475_19450) - 955124..955762 (-) 639 WP_104965267.1 hypothetical protein -
  AL475_RS04475 (AL475_19455) - 956081..957049 (+) 969 WP_104965668.1 tyrosine-type recombinase/integrase -
  AL475_RS04480 (AL475_19460) - 957211..957528 (-) 318 WP_020329287.1 DUF496 family protein -
  AL475_RS04485 (AL475_19465) - 957718..957915 (+) 198 WP_020329288.1 hypothetical protein -
  AL475_RS04490 (AL475_19470) - 957960..958595 (+) 636 WP_104965268.1 YceH family protein -
  AL475_RS04495 (AL475_19475) - 958606..958887 (+) 282 WP_075989319.1 GIY-YIG nuclease family protein -
  AL475_RS04500 (AL475_19480) - 959001..960158 (+) 1158 WP_104965269.1 conjugal transfer protein TraF -
  AL475_RS04505 (AL475_19485) luxP 960370..961467 (+) 1098 WP_020329292.1 autoinducer 2-binding periplasmic protein LuxP Regulator

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41555.79 Da        Isoelectric Point: 5.0163

>NTDB_id=167624 AL475_RS04505 WP_020329292.1 960370..961467(+) (luxP) [Vibrio fluvialis strain FDAARGOS_100]
MKKTLLLIVCLCFAPLAFAYSSQVLNGYWHYQEFLNANPQQKTLTESLSNAVRQSPARLNVKQSKPVTISVVYPGQQISD
YWIRNIKAFEMRLEELGIEYQINQVFTRPNLDMRQQSLSLMEALKNNTDYLIFTLDTTRHRKFIEHVLSSSPTKLILQNI
TTPVRDWDSRQPMMYVGFDHETGAQQLAQYYREHVPKGSKYSVLYFSEGYVSDARGDTFIQQMEGTGDYQLASSYYTKAT
QESGYEATLNILKNDPDIKFIYACSTDVALGAAQALQEQNREDIQVNGWGGGSAELEALSEGHLDVTVMRINDDTGIAMA
EAIKRDLEGEAVPVVYSGDFEIVTKEDNSQKIDVFKQRAFRYSDR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=167624 AL475_RS04505 WP_020329292.1 960370..961467(+) (luxP) [Vibrio fluvialis strain FDAARGOS_100]
ATGAAAAAAACACTACTACTTATAGTTTGCCTCTGTTTTGCTCCTTTAGCCTTTGCGTATTCGTCTCAAGTACTGAATGG
TTACTGGCATTATCAAGAGTTTCTGAATGCAAACCCGCAACAAAAAACGTTGACGGAGTCGCTTTCTAATGCGGTCAGAC
AATCGCCGGCAAGGCTGAATGTCAAACAAAGCAAGCCTGTGACCATTTCGGTTGTCTATCCGGGTCAGCAGATTTCAGAT
TACTGGATTCGCAATATTAAGGCGTTTGAGATGCGTCTGGAAGAGCTGGGGATTGAGTACCAAATCAATCAGGTTTTTAC
GCGGCCTAATCTGGATATGCGTCAGCAAAGCCTTTCTTTGATGGAAGCGCTGAAAAACAACACCGATTATCTGATCTTTA
CTCTCGACACTACGCGTCACCGCAAGTTTATCGAGCATGTTCTCAGCTCTTCTCCAACCAAATTGATTCTTCAGAACATC
ACCACTCCGGTCAGAGATTGGGATAGCCGTCAGCCGATGATGTATGTGGGCTTTGACCACGAAACCGGCGCGCAGCAACT
GGCGCAGTATTATCGCGAACACGTGCCTAAAGGCAGCAAATATTCCGTGCTGTATTTCTCTGAAGGCTACGTCAGTGACG
CACGTGGCGACACTTTTATTCAGCAGATGGAAGGCACTGGTGATTATCAGCTGGCCTCTTCTTACTACACCAAAGCCACT
CAGGAGAGCGGCTACGAAGCAACGCTCAACATCCTGAAAAACGATCCGGACATCAAATTTATTTATGCCTGTTCAACGGA
TGTGGCACTGGGCGCCGCACAAGCGTTGCAAGAGCAGAATCGTGAAGACATTCAGGTCAACGGCTGGGGCGGTGGTTCTG
CAGAACTTGAAGCGCTGAGTGAAGGGCATCTGGATGTCACTGTCATGCGAATCAACGATGACACGGGTATCGCGATGGCG
GAAGCCATCAAACGCGACCTCGAAGGCGAGGCGGTGCCTGTGGTCTATTCGGGCGATTTTGAAATCGTGACGAAAGAAGA
TAACTCGCAAAAAATCGACGTATTTAAGCAACGAGCATTTCGTTATTCCGATCGTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

70.411

100

0.704

Multiple sequence alignment