Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   A4W86_RS00085 Genome accession   NZ_CP017272
Coordinates   19182..20057 (+) Length   291 a.a.
NCBI ID   WP_016264319.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.1239     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 14182..25057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W86_RS00065 (A4W86_00065) - 15065..16372 (-) 1308 WP_099735356.1 nucleobase:cation symporter-2 family protein -
  A4W86_RS00070 (A4W86_00070) rsmG 16774..17514 (+) 741 WP_011373731.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  A4W86_RS00075 (A4W86_00075) noc 17514..18413 (+) 900 WP_016264317.1 nucleoid occlusion protein -
  A4W86_RS00080 (A4W86_00080) - 18425..19192 (+) 768 WP_016264318.1 AAA family ATPase -
  A4W86_RS00085 (A4W86_00085) spo0J 19182..20057 (+) 876 WP_016264319.1 ParB/RepB/Spo0J family partition protein Regulator
  A4W86_RS00090 (A4W86_00090) - 20076..20324 (+) 249 WP_011373735.1 DUF951 domain-containing protein -
  A4W86_RS00095 (A4W86_00095) ychF 20348..21448 (+) 1101 WP_011373736.1 redox-regulated ATPase YchF -
  A4W86_RS00100 (A4W86_00100) - 21466..22140 (+) 675 WP_056946775.1 DUF1129 domain-containing protein -
  A4W86_RS00105 (A4W86_00105) - 22177..22941 (+) 765 WP_016264322.1 prolyl oligopeptidase family serine peptidase -
  A4W86_RS00110 (A4W86_00110) - 23320..23988 (+) 669 WP_016264323.1 HAD hydrolase-like protein -
  A4W86_RS00115 (A4W86_00115) nrdI 23985..24452 (-) 468 WP_016264324.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32411.38 Da        Isoelectric Point: 9.8304

>NTDB_id=167604 A4W86_RS00085 WP_016264319.1 19182..20057(+) (spo0J) [Latilactobacillus sakei strain TMW 1.1239]
MVNKNGKGLGRGLEAVFSAFEGPNKNRADELVEEIALEDIRPNPYQPRKTFDEAALAELAASIKKSGVFQPIIVRKSING
YELIAGERRFRASKLAGKTTIPAITRQFDEEAMMEIAVLENLQREDLTPLEEAQAYDTLLKKLNLTQAEVSERLGKSRPY
IANYLRLLGLPADVKQLLQEGQLSMGQARTLLSLKKKSQISALAKRTIAESLTVRQLEQLVNQMNQTKAAKVAKTKIKSP
YIQASENQLVDKFDTKVNIAMNSKGRGKIEIDYGTVEDLNRILALLDVNID

Nucleotide


Download         Length: 876 bp        

>NTDB_id=167604 A4W86_RS00085 WP_016264319.1 19182..20057(+) (spo0J) [Latilactobacillus sakei strain TMW 1.1239]
ATGGTCAATAAAAATGGTAAAGGACTCGGTCGAGGACTCGAAGCTGTTTTTTCAGCATTTGAAGGACCCAATAAGAATCG
TGCGGATGAACTCGTTGAAGAGATTGCCCTCGAGGATATTCGTCCTAATCCTTATCAACCACGTAAAACGTTTGATGAAG
CGGCACTAGCGGAACTTGCTGCTTCCATTAAAAAATCAGGCGTTTTCCAACCGATTATTGTGCGTAAAAGCATTAATGGT
TACGAATTAATCGCTGGCGAACGTCGTTTCCGTGCTTCTAAATTAGCTGGCAAAACTACGATTCCAGCGATTACCCGTCA
ATTCGATGAAGAAGCGATGATGGAAATTGCAGTCTTGGAAAATCTTCAACGGGAAGATTTAACACCGCTAGAAGAAGCGC
AAGCCTACGACACCCTTTTGAAGAAGTTAAACTTAACGCAAGCTGAAGTGTCAGAACGCTTAGGCAAGAGTCGCCCTTAC
ATTGCCAACTACTTACGCCTGTTGGGCTTACCAGCAGACGTTAAGCAATTGTTGCAAGAAGGCCAACTCTCAATGGGACA
AGCACGGACGCTTTTATCATTGAAGAAAAAGAGTCAAATTAGCGCCCTCGCCAAGCGGACGATTGCCGAAAGCCTAACGG
TGCGCCAATTAGAACAACTCGTCAACCAAATGAATCAAACCAAAGCGGCTAAAGTTGCTAAGACTAAGATTAAATCACCT
TACATTCAAGCGAGTGAAAACCAATTAGTCGATAAATTCGATACCAAGGTTAATATTGCGATGAACAGTAAGGGCCGGGG
TAAAATCGAAATTGATTACGGCACGGTAGAGGATTTAAACCGAATCTTGGCTTTACTAGATGTCAATATTGATTAG

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(139-166)

HTH domain found in ParB protein (HTH_ParB)

(173-223)

ParB/Sulfiredoxin domain (ParB_N)

(33-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

42.629

86.254

0.368