Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | BHU02_RS09250 | Genome accession | NZ_CP017271 |
| Coordinates | 1813494..1815962 (-) | Length | 822 a.a. |
| NCBI ID | WP_056936454.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei subsp. sakei strain TMW 1.1189 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1808494..1820962
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BHU02_RS09235 (BHU02_09095) | - | 1809963..1810295 (-) | 333 | WP_025016000.1 | carboxymuconolactone decarboxylase family protein | - |
| BHU02_RS09240 (BHU02_09100) | - | 1810477..1811361 (+) | 885 | WP_035147339.1 | phosphate ABC transporter substrate-binding protein PstS family protein | - |
| BHU02_RS09245 (BHU02_09105) | - | 1811499..1813424 (+) | 1926 | WP_035147336.1 | fructose-bisphosphatase class III | - |
| BHU02_RS09250 (BHU02_09110) | clpC | 1813494..1815962 (-) | 2469 | WP_056936454.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| BHU02_RS09255 (BHU02_09115) | - | 1815980..1816450 (-) | 471 | WP_016265729.1 | CtsR family transcriptional regulator | - |
Sequence
Protein
Download Length: 822 a.a. Molecular weight: 90461.85 Da Isoelectric Point: 6.1319
>NTDB_id=167600 BHU02_RS09250 WP_056936454.1 1813494..1815962(-) (clpC) [Latilactobacillus sakei subsp. sakei strain TMW 1.1189]
MNNLFTPSAKNVLMLAQEQAKKFNHHALGTEHLLLALVLESEGIAGNALRELGVTPTDVLEEIERLTGYGDSIVAMGVGG
YLPYSPKAKQVLDLARVESQQANSVKIGTAHLLLALLRDDDIIAARILLNLGLSLAKTRQLLLQKMGIDAATAKKRAKAS
AKKVDQEGTPTLNQLARDLTQMARENQIDPVVGRDSEVKRLVQILARRSKNNPVLVGEPGVGKTAIAEGFAQRIINGDVP
SDMQQKRLMMLDMGSLVAGTKYRGEFEDRLKKIIEEIHEDGQVILFIDELHTLIGAGGAEGAIDASNILKPALARGELQL
IGATTLDEYQKYIEKDAALERRFATVTVDEPTPEDAEQILRGLRPRYEEHHGITISDEALHEAVVLANRYITNRFLPDKA
IDLMDEAAAKVRLDAVNQKSPIDRLETELQSLAKEKEVAVGAQDFEKAAAIHEKEIIAKAKMAKRQAAEQENGVRTDIQV
QPEDIAQVVAQWTGVPVTQLQRKESERLLQLEKVLHERVVGQEEAISAVACAIRRARSGLKDPKRPIGSFMFLGPTGVGK
TELAKALAEAMFGSEDNLIRVDMSEYMERYSTSRLVGAAPGYVGYDEGGQLTEKVRNKPYSVVLFDEVEKAHPDVFNILL
QVLDDGYLTDSKGRKVDFRNTIMIMTSNLGATALRDDKSVGFGVKDVTADYKAMQGRILEELKKSFRPEFLNRIDETVVF
HSLTQPELREIVKIMSKGILNRLAEQGVKIKMTAAAMDVVAKAGFDPEYGARPIRRALQTQVEDRLSEALLAGEITTDTP
VTIGATKGEITINSKKEKTTVK
MNNLFTPSAKNVLMLAQEQAKKFNHHALGTEHLLLALVLESEGIAGNALRELGVTPTDVLEEIERLTGYGDSIVAMGVGG
YLPYSPKAKQVLDLARVESQQANSVKIGTAHLLLALLRDDDIIAARILLNLGLSLAKTRQLLLQKMGIDAATAKKRAKAS
AKKVDQEGTPTLNQLARDLTQMARENQIDPVVGRDSEVKRLVQILARRSKNNPVLVGEPGVGKTAIAEGFAQRIINGDVP
SDMQQKRLMMLDMGSLVAGTKYRGEFEDRLKKIIEEIHEDGQVILFIDELHTLIGAGGAEGAIDASNILKPALARGELQL
IGATTLDEYQKYIEKDAALERRFATVTVDEPTPEDAEQILRGLRPRYEEHHGITISDEALHEAVVLANRYITNRFLPDKA
IDLMDEAAAKVRLDAVNQKSPIDRLETELQSLAKEKEVAVGAQDFEKAAAIHEKEIIAKAKMAKRQAAEQENGVRTDIQV
QPEDIAQVVAQWTGVPVTQLQRKESERLLQLEKVLHERVVGQEEAISAVACAIRRARSGLKDPKRPIGSFMFLGPTGVGK
TELAKALAEAMFGSEDNLIRVDMSEYMERYSTSRLVGAAPGYVGYDEGGQLTEKVRNKPYSVVLFDEVEKAHPDVFNILL
QVLDDGYLTDSKGRKVDFRNTIMIMTSNLGATALRDDKSVGFGVKDVTADYKAMQGRILEELKKSFRPEFLNRIDETVVF
HSLTQPELREIVKIMSKGILNRLAEQGVKIKMTAAAMDVVAKAGFDPEYGARPIRRALQTQVEDRLSEALLAGEITTDTP
VTIGATKGEITINSKKEKTTVK
Nucleotide
Download Length: 2469 bp
>NTDB_id=167600 BHU02_RS09250 WP_056936454.1 1813494..1815962(-) (clpC) [Latilactobacillus sakei subsp. sakei strain TMW 1.1189]
ATGAATAATCTATTTACACCAAGTGCCAAAAACGTTTTAATGTTAGCGCAAGAACAAGCTAAGAAGTTTAATCATCATGC
ATTAGGGACGGAACATCTGTTATTAGCGCTCGTCCTCGAAAGCGAAGGGATTGCTGGGAACGCACTACGTGAACTCGGTG
TGACACCCACTGATGTCTTAGAAGAAATTGAACGCTTAACCGGTTATGGTGATTCAATCGTTGCCATGGGTGTGGGCGGC
TATTTGCCATACTCACCTAAAGCTAAACAAGTGCTAGATTTAGCGCGCGTTGAATCACAACAAGCTAACTCAGTCAAAAT
CGGGACGGCACACCTATTACTAGCGTTATTACGCGATGATGACATTATTGCGGCTCGTATTCTATTAAACTTAGGCCTCA
GTTTAGCCAAAACACGTCAATTATTACTCCAAAAGATGGGGATTGATGCTGCAACTGCTAAGAAACGCGCTAAAGCCAGT
GCTAAAAAGGTTGATCAAGAAGGCACGCCTACTTTGAATCAATTGGCACGCGATTTAACCCAAATGGCCCGCGAAAATCA
AATTGATCCAGTCGTTGGTCGTGATTCAGAAGTTAAACGACTCGTGCAAATCCTAGCACGTCGTTCTAAAAATAATCCCG
TTTTAGTTGGCGAACCCGGTGTCGGTAAAACAGCGATTGCTGAAGGCTTTGCCCAACGGATTATCAACGGTGATGTGCCA
AGCGACATGCAACAAAAACGGTTAATGATGCTTGATATGGGCTCATTAGTCGCTGGCACTAAGTATCGTGGGGAATTTGA
AGATCGTCTCAAGAAGATTATTGAAGAAATCCATGAAGATGGCCAAGTAATCCTCTTTATCGATGAATTGCATACCTTAA
TTGGTGCTGGTGGGGCAGAAGGCGCAATTGACGCCTCAAATATTTTGAAACCAGCCCTCGCCCGTGGCGAATTGCAATTA
ATCGGTGCAACAACACTTGATGAATACCAAAAATACATCGAAAAAGATGCAGCTCTAGAACGGCGCTTCGCGACGGTGAC
GGTTGATGAACCAACACCAGAAGATGCGGAACAAATCTTACGCGGGTTACGACCACGTTATGAAGAACATCACGGCATCA
CAATCTCTGATGAAGCATTACACGAAGCCGTTGTTTTAGCGAACCGTTATATCACAAACCGTTTCTTACCTGATAAGGCA
ATTGATTTGATGGATGAGGCGGCTGCAAAGGTCAGATTAGATGCTGTTAACCAAAAATCACCAATCGATCGCTTAGAAAC
TGAATTGCAATCGTTGGCGAAAGAAAAAGAAGTCGCAGTTGGTGCACAAGACTTTGAAAAAGCCGCTGCCATTCACGAAA
AAGAAATTATTGCTAAGGCTAAAATGGCTAAGCGCCAAGCAGCCGAACAAGAAAATGGTGTCCGGACAGATATTCAAGTC
CAACCAGAAGATATCGCACAAGTCGTTGCCCAATGGACGGGTGTGCCAGTCACTCAATTGCAACGTAAAGAAAGCGAACG
CTTGTTGCAACTTGAAAAAGTCTTGCATGAACGGGTTGTTGGCCAAGAAGAAGCGATTTCAGCTGTGGCCTGTGCAATTC
GTCGGGCCCGCAGTGGTTTGAAGGATCCTAAGCGCCCAATCGGTTCATTTATGTTCTTAGGCCCTACTGGGGTTGGGAAG
ACCGAATTGGCCAAAGCATTGGCAGAAGCCATGTTTGGGTCTGAAGACAACTTGATTCGGGTTGATATGTCAGAATACAT
GGAACGTTACAGTACGAGCCGGTTAGTCGGGGCAGCACCTGGTTACGTCGGTTATGACGAAGGTGGCCAATTAACTGAAA
AAGTCCGCAATAAACCTTATTCCGTTGTTCTTTTTGATGAAGTTGAAAAGGCTCATCCAGACGTCTTCAATATCTTGTTA
CAAGTCTTAGATGATGGCTATTTGACAGATTCTAAGGGTCGGAAAGTTGATTTCCGGAATACAATCATGATCATGACGTC
TAACTTAGGGGCAACAGCCTTACGTGATGACAAGTCAGTTGGTTTTGGGGTCAAAGATGTCACTGCCGATTACAAAGCAA
TGCAAGGCCGGATTTTGGAAGAATTGAAGAAGTCATTCCGCCCAGAATTCTTAAACCGAATCGATGAAACGGTGGTCTTC
CATTCATTAACACAACCTGAATTGCGTGAAATCGTCAAGATTATGTCCAAAGGCATCTTAAACCGCTTAGCGGAACAAGG
TGTCAAGATCAAGATGACTGCTGCAGCGATGGATGTTGTGGCTAAAGCCGGCTTTGATCCAGAATACGGTGCGCGCCCAA
TTCGTCGTGCATTACAAACGCAAGTTGAAGATCGCTTGAGTGAAGCCTTATTGGCTGGTGAAATCACGACTGATACACCA
GTGACAATTGGGGCTACCAAAGGTGAAATTACCATTAATAGTAAAAAAGAAAAAACAACTGTTAAATAA
ATGAATAATCTATTTACACCAAGTGCCAAAAACGTTTTAATGTTAGCGCAAGAACAAGCTAAGAAGTTTAATCATCATGC
ATTAGGGACGGAACATCTGTTATTAGCGCTCGTCCTCGAAAGCGAAGGGATTGCTGGGAACGCACTACGTGAACTCGGTG
TGACACCCACTGATGTCTTAGAAGAAATTGAACGCTTAACCGGTTATGGTGATTCAATCGTTGCCATGGGTGTGGGCGGC
TATTTGCCATACTCACCTAAAGCTAAACAAGTGCTAGATTTAGCGCGCGTTGAATCACAACAAGCTAACTCAGTCAAAAT
CGGGACGGCACACCTATTACTAGCGTTATTACGCGATGATGACATTATTGCGGCTCGTATTCTATTAAACTTAGGCCTCA
GTTTAGCCAAAACACGTCAATTATTACTCCAAAAGATGGGGATTGATGCTGCAACTGCTAAGAAACGCGCTAAAGCCAGT
GCTAAAAAGGTTGATCAAGAAGGCACGCCTACTTTGAATCAATTGGCACGCGATTTAACCCAAATGGCCCGCGAAAATCA
AATTGATCCAGTCGTTGGTCGTGATTCAGAAGTTAAACGACTCGTGCAAATCCTAGCACGTCGTTCTAAAAATAATCCCG
TTTTAGTTGGCGAACCCGGTGTCGGTAAAACAGCGATTGCTGAAGGCTTTGCCCAACGGATTATCAACGGTGATGTGCCA
AGCGACATGCAACAAAAACGGTTAATGATGCTTGATATGGGCTCATTAGTCGCTGGCACTAAGTATCGTGGGGAATTTGA
AGATCGTCTCAAGAAGATTATTGAAGAAATCCATGAAGATGGCCAAGTAATCCTCTTTATCGATGAATTGCATACCTTAA
TTGGTGCTGGTGGGGCAGAAGGCGCAATTGACGCCTCAAATATTTTGAAACCAGCCCTCGCCCGTGGCGAATTGCAATTA
ATCGGTGCAACAACACTTGATGAATACCAAAAATACATCGAAAAAGATGCAGCTCTAGAACGGCGCTTCGCGACGGTGAC
GGTTGATGAACCAACACCAGAAGATGCGGAACAAATCTTACGCGGGTTACGACCACGTTATGAAGAACATCACGGCATCA
CAATCTCTGATGAAGCATTACACGAAGCCGTTGTTTTAGCGAACCGTTATATCACAAACCGTTTCTTACCTGATAAGGCA
ATTGATTTGATGGATGAGGCGGCTGCAAAGGTCAGATTAGATGCTGTTAACCAAAAATCACCAATCGATCGCTTAGAAAC
TGAATTGCAATCGTTGGCGAAAGAAAAAGAAGTCGCAGTTGGTGCACAAGACTTTGAAAAAGCCGCTGCCATTCACGAAA
AAGAAATTATTGCTAAGGCTAAAATGGCTAAGCGCCAAGCAGCCGAACAAGAAAATGGTGTCCGGACAGATATTCAAGTC
CAACCAGAAGATATCGCACAAGTCGTTGCCCAATGGACGGGTGTGCCAGTCACTCAATTGCAACGTAAAGAAAGCGAACG
CTTGTTGCAACTTGAAAAAGTCTTGCATGAACGGGTTGTTGGCCAAGAAGAAGCGATTTCAGCTGTGGCCTGTGCAATTC
GTCGGGCCCGCAGTGGTTTGAAGGATCCTAAGCGCCCAATCGGTTCATTTATGTTCTTAGGCCCTACTGGGGTTGGGAAG
ACCGAATTGGCCAAAGCATTGGCAGAAGCCATGTTTGGGTCTGAAGACAACTTGATTCGGGTTGATATGTCAGAATACAT
GGAACGTTACAGTACGAGCCGGTTAGTCGGGGCAGCACCTGGTTACGTCGGTTATGACGAAGGTGGCCAATTAACTGAAA
AAGTCCGCAATAAACCTTATTCCGTTGTTCTTTTTGATGAAGTTGAAAAGGCTCATCCAGACGTCTTCAATATCTTGTTA
CAAGTCTTAGATGATGGCTATTTGACAGATTCTAAGGGTCGGAAAGTTGATTTCCGGAATACAATCATGATCATGACGTC
TAACTTAGGGGCAACAGCCTTACGTGATGACAAGTCAGTTGGTTTTGGGGTCAAAGATGTCACTGCCGATTACAAAGCAA
TGCAAGGCCGGATTTTGGAAGAATTGAAGAAGTCATTCCGCCCAGAATTCTTAAACCGAATCGATGAAACGGTGGTCTTC
CATTCATTAACACAACCTGAATTGCGTGAAATCGTCAAGATTATGTCCAAAGGCATCTTAAACCGCTTAGCGGAACAAGG
TGTCAAGATCAAGATGACTGCTGCAGCGATGGATGTTGTGGCTAAAGCCGGCTTTGATCCAGAATACGGTGCGCGCCCAA
TTCGTCGTGCATTACAAACGCAAGTTGAAGATCGCTTGAGTGAAGCCTTATTGGCTGGTGAAATCACGACTGATACACCA
GTGACAATTGGGGCTACCAAAGGTGAAATTACCATTAATAGTAAAAAAGAAAAAACAACTGTTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
56.934 |
100 |
0.569 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
54.701 |
99.635 |
0.545 |
| clpC | Streptococcus pneumoniae Rx1 |
49.695 |
99.635 |
0.495 |
| clpC | Streptococcus pneumoniae D39 |
49.695 |
99.635 |
0.495 |
| clpC | Streptococcus pneumoniae TIGR4 |
49.573 |
99.635 |
0.494 |
| clpC | Streptococcus thermophilus LMD-9 |
47.749 |
100 |
0.49 |
| clpC | Streptococcus thermophilus LMG 18311 |
47.406 |
100 |
0.489 |
| clpC | Streptococcus mutans UA159 |
47.857 |
100 |
0.489 |
| clpE | Streptococcus pneumoniae Rx1 |
49.005 |
79.44 |
0.389 |
| clpE | Streptococcus pneumoniae D39 |
49.005 |
79.44 |
0.389 |
| clpE | Streptococcus pneumoniae R6 |
49.005 |
79.44 |
0.389 |
| clpE | Streptococcus pneumoniae TIGR4 |
49.005 |
79.44 |
0.389 |
| clpE | Streptococcus mutans UA159 |
49.763 |
77.007 |
0.383 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
49.035 |
75.669 |
0.371 |