Detailed information NTG0167593

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: BHU02_RS07675
• Genome accession: NZ_CP017271
• Coordinates: 1507602..1509767 (+)
• Length: 721 a.a.
• NCBI ID: WP_025016064.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei subsp. sakei strain TMW 1.1189
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1502602..1514767

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BHU02_RS07655 (BHU02_07530)	-	1504458..1504898 (-)	441	WP_025016062.1	CopY/TcrY family copper transport repressor	-
BHU02_RS07660 (BHU02_07535)	ptsP	1505047..1506771 (-)	1725	WP_025016063.1	phosphoenolpyruvate--protein phosphotransferase	-
BHU02_RS07665 (BHU02_07540)	-	1506768..1507034 (-)	267	WP_004265632.1	phosphocarrier protein HPr	-
BHU02_RS07670 (BHU02_07545)	-	1507177..1507368 (-)	192	WP_011375155.1	hypothetical protein	-
BHU02_RS07675 (BHU02_07550)	clpC	1507602..1509767 (+)	2166	WP_025016064.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
BHU02_RS07680 (BHU02_07555)	-	1509875..1510171 (+)	297	WP_011375157.1	DUF1827 family protein	-
BHU02_RS07685 (BHU02_07560)	-	1510296..1510718 (+)	423	WP_011375158.1	PPC domain-containing DNA-binding protein	-
BHU02_RS07690 (BHU02_07565)	-	1510925..1512010 (+)	1086	WP_025016065.1	MucBP domain-containing protein	-
BHU02_RS07695 (BHU02_07570)	-	1512123..1513700 (-)	1578	WP_011375160.1	peptide chain release factor 3	-

Sequence

Protein

• Length: 721 a.a.
• Molecular weight: 79738.09 Da
• Isoelectric Point: 5.0573

>NTDB_id=167593 BHU02_RS07675 WP_025016064.1 1507602..1509767(+) (clpC) [Latilactobacillus sakei subsp. sakei strain TMW 1.1189]
MLCQNCQKNPATIHLYTSVNGQNQAINLCQNCYQALKQQGMSSQYNDPFGFSNLDELFNAINNPNAERNAANQGPQTQGG
RNGGGNNGQNGESLLSQFGVNLTNLAKGGQIDPVIGRDKEIARVIEILNRRTKNNPVLIGEAGVGKTAVVEGLAQKIADG
DVPAKLKDRQVIRLDVVSLVQGTGIRGQFEERMQQLITELKQNKQIILFIDEIHEIVGAGNAEGGMDAGNVLKPALARGE
LQLVGATTNNEFRQIEKDAALARRLQPVAVNEPSVDETVLILKGLQDKYESYHHVHYTDEALKAAAALSSRYIQDRYLPD
KAIDLLDEAGSKKNLTITLMDPKELEAKIKSAEAQKQEALKQEDYEKAATYRDQVTQLSEMKANNSVEKSQEPTITEKDM
EKIVEEKTHIPVGELKAQEQAQLKNLAQDLEARVIGQDTAVDKVARSIRRSRIGFNKSGRPIGSFLFVGPTGVGKTELAK
QIAKELFGSTDAMIRFDMSEYMEKFSVSKLIGSPPGYVGYEEAGQLTEQVRRNPYSLILLDEIEKAHPDVMHMFLQILDD
GRLTDSQGRTVSFKDTIIIMTSNAGQTDAEANVGFGAAVAGQTHSILDQLTNYFKPEFLNRFDDIIEFQPLSKDNLLKIV
SLMLDQTNAMIADQGLHIAVTDDAKSKLVDLGYNPEMGARPLRRVIQEQIEDRVADYYLDHPEHKQLKAQLNDDQIQIVQ
G

Nucleotide

• Length: 2166 bp

>NTDB_id=167593 BHU02_RS07675 WP_025016064.1 1507602..1509767(+) (clpC) [Latilactobacillus sakei subsp. sakei strain TMW 1.1189]
ATGCTTTGTCAAAATTGTCAAAAAAATCCAGCAACAATCCATCTCTACACTAGCGTCAATGGTCAAAACCAAGCCATTAA
CCTTTGTCAAAACTGTTATCAAGCACTAAAGCAACAAGGAATGAGTAGTCAATATAATGATCCCTTTGGTTTTAGTAATC
TTGATGAACTCTTCAATGCAATCAACAATCCAAACGCTGAACGCAATGCTGCTAACCAAGGCCCCCAAACACAAGGTGGC
CGTAATGGCGGCGGTAACAACGGTCAAAATGGTGAAAGTCTACTCAGCCAATTTGGTGTGAACCTCACCAACCTTGCTAA
GGGTGGTCAAATTGATCCGGTGATTGGTCGCGATAAGGAAATCGCGCGCGTCATCGAAATTCTCAATCGGCGTACCAAGA
ATAATCCAGTCTTAATTGGTGAAGCCGGCGTTGGTAAAACAGCCGTTGTCGAAGGTTTAGCGCAAAAAATTGCCGATGGC
GACGTTCCTGCTAAATTAAAGGATCGCCAAGTGATTCGCTTGGATGTCGTTTCATTAGTACAAGGGACTGGTATTCGCGG
TCAATTTGAAGAACGGATGCAACAGTTGATCACTGAGCTCAAACAAAATAAGCAGATTATCCTCTTTATTGATGAAATTC
ACGAAATCGTTGGCGCCGGCAATGCTGAAGGCGGCATGGATGCTGGTAACGTGTTGAAGCCAGCTCTTGCGCGTGGCGAA
TTACAACTCGTTGGCGCCACAACTAATAATGAATTCCGTCAGATTGAAAAAGACGCAGCCCTTGCACGTCGTCTTCAACC
GGTCGCGGTCAACGAACCATCTGTTGACGAAACCGTTCTAATTCTCAAAGGGCTTCAAGATAAATACGAAAGTTATCACC
ACGTTCACTATACGGACGAGGCGCTTAAAGCAGCAGCGGCCCTTTCTAGTCGTTATATCCAAGATCGTTATTTGCCTGAT
AAGGCTATCGACCTTTTGGATGAAGCAGGCTCTAAGAAAAACTTGACGATTACCTTGATGGATCCTAAGGAATTAGAAGC
CAAGATTAAATCTGCAGAAGCACAAAAACAAGAAGCCCTCAAACAAGAAGATTACGAAAAAGCAGCTACCTATCGTGATC
AAGTCACACAGCTCTCTGAAATGAAAGCTAATAATTCAGTTGAAAAATCCCAAGAACCAACAATCACCGAAAAGGATATG
GAAAAAATTGTCGAAGAAAAAACCCATATTCCAGTTGGCGAATTAAAGGCGCAAGAACAAGCTCAACTTAAAAACTTAGC
GCAAGATCTTGAAGCACGTGTCATTGGTCAAGATACCGCAGTTGATAAAGTCGCTCGTTCAATTCGTCGTAGTCGAATTG
GCTTTAATAAATCCGGCCGACCAATTGGCTCCTTCCTCTTTGTTGGCCCAACCGGGGTTGGTAAAACGGAATTAGCCAAA
CAAATTGCCAAAGAACTCTTTGGCAGTACCGATGCGATGATTCGCTTTGATATGAGTGAATACATGGAGAAATTCAGTGT
GTCAAAATTGATTGGTTCACCTCCTGGCTACGTTGGTTACGAAGAAGCCGGGCAATTAACGGAACAAGTTCGTCGGAACC
CTTATAGTTTGATTCTTTTGGATGAAATCGAAAAGGCTCACCCTGACGTTATGCACATGTTCTTACAAATTCTAGATGAC
GGTCGTCTAACCGATTCACAAGGTCGGACTGTCAGCTTCAAAGACACAATCATTATCATGACGTCTAACGCTGGACAAAC
TGATGCTGAGGCTAACGTTGGTTTCGGTGCAGCTGTCGCTGGCCAAACCCATTCAATTCTCGATCAGTTAACGAACTACT
TTAAACCAGAATTCTTAAATCGTTTCGACGATATTATTGAATTCCAACCATTAAGTAAAGATAATCTATTGAAGATTGTC
AGCTTAATGCTTGATCAAACTAACGCGATGATTGCCGATCAAGGCCTCCACATTGCTGTGACGGATGACGCTAAATCTAA
ATTAGTCGATTTGGGCTACAACCCTGAAATGGGCGCTCGGCCACTACGTCGTGTCATTCAAGAACAAATTGAAGACCGCG
TTGCTGATTATTATTTAGATCATCCAGAACATAAGCAATTAAAAGCGCAGTTAAATGATGATCAGATTCAAATTGTGCAA
GGATAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (631-702)

• ATPase family associated with various cellular activities (AAA) (AAA) (137-265)

• AAA lid domain (AAA_lid_9) (274-372)

• AAA domain (Cdc48 subfamily) (AAA_2) (460-625)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	67.442	100	0.684
clpE	Streptococcus mutans UA159	67.03	100	0.682
clpE	Streptococcus pneumoniae TIGR4	63.946	100	0.652
clpE	Streptococcus pneumoniae Rx1	63.946	100	0.652
clpE	Streptococcus pneumoniae D39	63.946	100	0.652
clpE	Streptococcus pneumoniae R6	63.946	100	0.652
clpC	Bacillus subtilis subsp. subtilis str. 168	51.502	92.372	0.476
clpC	Streptococcus thermophilus LMD-9	46.024	90.707	0.417
clpC	Streptococcus thermophilus LMG 18311	46.024	90.707	0.417
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	47.334	85.853	0.406
clpC	Streptococcus pneumoniae Rx1	47.394	85.16	0.404
clpC	Streptococcus pneumoniae D39	47.394	85.16	0.404
clpC	Streptococcus pneumoniae TIGR4	47.231	85.16	0.402
clpC	Streptococcus mutans UA159	47.231	85.16	0.402