Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   BHU02_RS07620 Genome accession   NZ_CP017271
Coordinates   1494758..1495432 (+) Length   224 a.a.
NCBI ID   WP_025016060.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain TMW 1.1189     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1489758..1500432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHU02_RS07600 (BHU02_07475) - 1490092..1490832 (-) 741 WP_025016058.1 MBL fold metallo-hydrolase -
  BHU02_RS07605 (BHU02_07480) - 1490962..1491747 (-) 786 WP_016265492.1 DUF975 family protein -
  BHU02_RS07610 (BHU02_07485) - 1491765..1493864 (-) 2100 WP_251920195.1 ABC transporter permease -
  BHU02_RS07615 (BHU02_07490) - 1493842..1494618 (-) 777 WP_011375145.1 ABC transporter ATP-binding protein -
  BHU02_RS07620 (BHU02_07495) braR 1494758..1495432 (+) 675 WP_025016060.1 response regulator transcription factor Regulator
  BHU02_RS07625 (BHU02_07500) - 1495442..1496509 (+) 1068 WP_016265495.1 HAMP domain-containing histidine kinase -
  BHU02_RS07630 (BHU02_07505) - 1496619..1497785 (+) 1167 WP_016265496.1 hypothetical protein -
  BHU02_RS07635 (BHU02_07510) - 1497819..1499114 (-) 1296 WP_016265497.1 PTS sugar transporter subunit IIC -
  BHU02_RS07640 (BHU02_07515) nrdG 1499360..1499941 (-) 582 WP_016265498.1 anaerobic ribonucleoside-triphosphate reductase activating protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 26009.05 Da        Isoelectric Point: 4.8271

>NTDB_id=167592 BHU02_RS07620 WP_025016060.1 1494758..1495432(+) (braR) [Latilactobacillus sakei subsp. sakei strain TMW 1.1189]
MFEIMIVEDDPTIANLIAENLEKWQLKAIIPDDFDTIFDRFLTDKPHLVLLDINLPVYDGFYWCRKIREVSKVPIIFISS
RSTNMDMVMSMNMGGYDFVNKPFSMEVLIAKINALLRRTYNYVDQNTDVIEHNGLLINLQSGGAQVGDTVVDLSKNEYKL
LQFLMRQHGQIVSREKLLRALWDDERFVDDNTLTVNINRLRKKIEQAGLEDYIQTKIGQGYIIP

Nucleotide


Download         Length: 675 bp        

>NTDB_id=167592 BHU02_RS07620 WP_025016060.1 1494758..1495432(+) (braR) [Latilactobacillus sakei subsp. sakei strain TMW 1.1189]
ATGTTTGAAATTATGATTGTTGAAGATGATCCTACAATTGCTAACTTGATTGCTGAAAACTTAGAGAAATGGCAGTTAAA
AGCCATTATCCCCGATGATTTCGATACCATTTTTGACCGTTTTTTAACGGATAAACCCCACTTAGTCCTACTAGATATCA
ATTTACCCGTCTATGACGGTTTCTATTGGTGTCGTAAAATTCGTGAAGTTTCTAAAGTGCCGATTATCTTCATCTCTAGC
CGCAGTACTAATATGGATATGGTGATGTCAATGAACATGGGTGGCTATGATTTTGTTAACAAGCCCTTTTCAATGGAAGT
CTTAATCGCTAAAATCAATGCGCTTTTACGCCGGACCTATAACTATGTCGATCAAAATACAGACGTCATCGAACATAACG
GCCTTCTAATTAACTTACAAAGTGGTGGGGCTCAAGTTGGTGATACTGTCGTTGACCTCTCTAAAAATGAATATAAGTTA
CTCCAATTTTTGATGCGCCAACACGGTCAAATTGTCAGTCGTGAAAAACTCCTACGGGCGTTATGGGACGACGAACGTTT
TGTCGATGACAATACATTAACCGTCAATATCAATCGGCTGCGTAAAAAAATCGAACAAGCCGGTTTAGAAGACTATATTC
AAACTAAAATCGGCCAAGGCTACATCATCCCATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

46.119

97.768

0.451