Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AL515_RS09705 Genome accession   NZ_CP014030
Coordinates   2009916..2010530 (+) Length   204 a.a.
NCBI ID   WP_048212109.1    Uniprot ID   A0A9Q7ZQA3
Organism   Citrobacter sp. FDAARGOS_156 strain FDAARGOS_155     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2004916..2015530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL515_RS09685 (AL515_09240) - 2005288..2007048 (-) 1761 WP_048212112.1 Lon protease family protein -
  AL515_RS09690 (AL515_09245) matP 2007234..2007686 (+) 453 WP_005123520.1 macrodomain Ter protein MatP -
  AL515_RS09695 (AL515_09250) ompA 2007785..2008834 (-) 1050 WP_048212110.1 porin OmpA -
  AL515_RS09700 (AL515_09255) sulA 2009190..2009699 (-) 510 WP_040231828.1 SOS-induced cell division inhibitor SulA -
  AL515_RS09705 (AL515_09260) sxy/tfoX 2009916..2010530 (+) 615 WP_048212109.1 TfoX/Sxy family DNA transformation protein Regulator
  AL515_RS09710 (AL515_09265) yccS 2010508..2012661 (-) 2154 WP_048212108.1 YccS family putative transporter -
  AL515_RS09715 (AL515_09270) - 2012680..2013126 (-) 447 WP_005123514.1 YccF domain-containing protein -
  AL515_RS09720 (AL515_09275) helD 2013252..2015306 (+) 2055 WP_061067639.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23336.10 Da        Isoelectric Point: 9.6920

>NTDB_id=167586 AL515_RS09705 WP_048212109.1 2009916..2010530(+) (sxy/tfoX) [Citrobacter sp. FDAARGOS_156 strain FDAARGOS_155]
MKKLSYARIYKSQEYLASLGTIRYRSLFGGYSLTVEDTVFAMVASGELYLRACEQSAQYCVKHSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSRYSLDAALKEKQSRFAQHRLRGLPNMTFHLETLLNEAGIKDESTLRMLGAKMCWLKLRQVN
PALTVKILYALEGAIGGIHEAALPAIRRQELVEWVSSLTPEPVY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=167586 AL515_RS09705 WP_048212109.1 2009916..2010530(+) (sxy/tfoX) [Citrobacter sp. FDAARGOS_156 strain FDAARGOS_155]
ATGAAAAAACTTTCTTATGCAAGGATCTATAAATCACAAGAATATCTGGCGTCATTGGGGACTATTCGTTATCGATCGCT
GTTTGGGGGTTATAGCCTGACGGTTGAGGACACGGTATTCGCCATGGTCGCCAGTGGCGAGTTATATCTTCGGGCCTGTG
AACAGAGTGCGCAGTACTGTGTAAAACATTCCCCTGTCTGGCTGACATTTATAAAACGTGGACGTCCGGTGGTGCTCAAT
TATTATCAGGTGAACGATACGCTGTGGCAAAACCAGCAACAACTGGTGTCGCTATCACGGTATTCACTGGATGCGGCGTT
AAAAGAAAAGCAAAGTCGTTTTGCACAGCATCGCCTGCGTGGACTGCCGAACATGACATTCCATCTGGAAACCCTGCTGA
ATGAAGCAGGTATAAAAGATGAAAGCACATTACGCATGTTGGGGGCAAAAATGTGCTGGTTGAAACTGCGACAGGTTAAT
CCCGCCCTGACGGTGAAAATACTCTATGCCCTTGAAGGCGCAATTGGGGGAATTCATGAGGCGGCGCTCCCGGCGATTCG
TCGCCAGGAGCTTGTGGAGTGGGTGAGTTCTCTTACGCCTGAACCGGTGTACTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

72.637

98.529

0.716

Multiple sequence alignment