Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   BHU02_RS00830 Genome accession   NZ_CP017271
Coordinates   162369..164660 (+) Length   763 a.a.
NCBI ID   WP_056936445.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain TMW 1.1189     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 157369..169660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHU02_RS00805 (BHU02_00795) - 157742..158200 (+) 459 WP_011373843.1 MarR family transcriptional regulator -
  BHU02_RS00810 (BHU02_00800) - 158574..159475 (-) 902 Protein_159 proline-specific peptidase family protein -
  BHU02_RS00815 (BHU02_00805) - 159549..161387 (-) 1839 WP_016264408.1 cation:proton antiporter family protein -
  BHU02_RS00820 (BHU02_00810) crcB 161524..161931 (+) 408 WP_016264409.1 fluoride efflux transporter CrcB -
  BHU02_RS00825 (BHU02_00815) - 161928..162275 (+) 348 WP_016264410.1 CrcB family protein -
  BHU02_RS00830 (BHU02_00820) helD 162369..164660 (+) 2292 WP_056936445.1 RNA polymerase recycling motor HelD Machinery gene
  BHU02_RS00835 (BHU02_00825) coaA 164768..165697 (+) 930 WP_025016146.1 type I pantothenate kinase -
  BHU02_RS00840 (BHU02_00830) guaA 165864..167417 (+) 1554 WP_016264413.1 glutamine-hydrolyzing GMP synthase -
  BHU02_RS00845 (BHU02_00835) - 167557..168924 (+) 1368 WP_056936444.1 hypothetical protein -

Sequence

Protein


Download         Length: 763 a.a.        Molecular weight: 87685.71 Da        Isoelectric Point: 6.5758

>NTDB_id=167530 BHU02_RS00830 WP_056936445.1 162369..164660(+) (helD) [Latilactobacillus sakei subsp. sakei strain TMW 1.1189]
MTDVQKSLEQSRLTEIIGLIKKAETHFEGAVKRAKSEEKEINENFFNDVRLNFNNDSAMTETAVSIEQQRQMLQERNHSW
QQSSRQLATLQKMEKTPYFARVDFQEKGEPKSESIYIGLGSFTDTDDHFLIYDWRAPISSIYYEGKTGAVTYQTPDGPQD
VNISLKRQFLIEDGQIKALFDTQETIGDQMLLEVLGEKSDTQMKSIVTTIQREQNQIIRNTDADLLFVQGAAGSGKTSAI
LQRIAFLLYRYRGNLDSSQVIMFSPNQLFNDYIADVLPELGEQNMIQMTYFQYVARRLPNMAVQSLFDQFETPVNETDGR
ISRLKESLVFYKAVKKYAAHLEKADMRFRDMKVKGRVLITKEHISEVYYRFNENYHLGNRLDATKESLLRTLSHKVDHET
KADWVTEQAENMSDEEIRELMSGKDFKTGDAESKFIAKQIVLEAFKPVRRSIQRNRFLSIQAQYIHFLRVVPQLVKLADF
DITEEQWQDHVTHFVAQLKAKQMTLQDVTPYLHLYDLMTGKKGERDMRFVFIDEIQDYTPYELAFLKLHFPKARFTLLGD
LNQAIFTKGNSTNLLQQVQQLFDAQNTKVVQLTRSYRSTQQVTDFTKGLLKGGQAIEAFNRVGDKPNLIVRQSEAELVAD
VNRQLAANEADKLSTAIITKTLVQAQELTKMLKETGTKVTLIRSENQRLAAGTLVVPSFLAKGLEFDAIIGWQISAANYN
HEDQRQLLYTICSRAMHRLTLLATDALSPLIDNVDPEKYTLTK

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=167530 BHU02_RS00830 WP_056936445.1 162369..164660(+) (helD) [Latilactobacillus sakei subsp. sakei strain TMW 1.1189]
TTGACTGACGTACAGAAATCATTGGAACAAAGCCGATTAACAGAAATTATTGGTTTAATTAAAAAAGCTGAGACCCATTT
TGAAGGGGCTGTTAAGCGCGCAAAATCGGAAGAAAAAGAAATTAACGAGAACTTCTTCAACGACGTTCGCCTTAACTTCA
ATAACGATTCCGCGATGACTGAAACCGCCGTTTCGATTGAACAGCAGCGGCAAATGCTACAAGAACGCAATCACTCGTGG
CAACAATCTTCACGGCAATTGGCAACCTTGCAAAAGATGGAAAAGACGCCATACTTTGCCCGTGTTGATTTTCAAGAAAA
GGGTGAACCTAAATCCGAATCAATTTATATCGGGTTAGGCTCATTTACAGATACCGACGATCATTTCTTAATTTATGATT
GGCGGGCACCAATTTCATCAATTTACTATGAAGGTAAGACGGGCGCTGTGACGTACCAAACACCAGACGGTCCGCAAGAT
GTGAATATCTCACTTAAGCGTCAATTTTTGATTGAAGATGGCCAAATCAAGGCTTTATTTGATACGCAAGAAACGATTGG
CGATCAAATGTTATTAGAAGTGTTAGGTGAAAAATCTGATACACAGATGAAGAGTATCGTGACGACGATTCAACGTGAAC
AAAATCAGATTATCCGTAATACCGATGCTGATTTGTTATTCGTTCAAGGGGCAGCTGGCTCAGGGAAAACGTCAGCTATC
TTGCAACGCATCGCGTTTTTACTCTATCGCTATCGGGGCAATTTAGATTCGAGCCAAGTAATCATGTTCTCGCCTAACCA
ATTATTCAACGACTACATCGCAGATGTGTTGCCTGAATTGGGCGAACAAAATATGATTCAAATGACTTACTTCCAATATG
TGGCGCGCCGGCTACCAAACATGGCGGTCCAGAGCCTCTTTGATCAATTCGAAACACCAGTTAACGAAACCGATGGCCGG
ATTAGTCGCTTGAAAGAAAGTCTCGTCTTTTATAAGGCTGTTAAAAAGTACGCTGCACATCTTGAAAAAGCCGACATGCG
CTTCCGCGATATGAAGGTCAAGGGCCGCGTCTTGATTACGAAGGAACACATCAGCGAGGTTTATTACCGGTTTAATGAAA
ACTACCATCTCGGCAATCGATTAGATGCGACTAAAGAAAGTTTGTTGCGGACATTGAGCCACAAGGTCGATCACGAAACT
AAGGCCGACTGGGTGACTGAGCAAGCCGAGAATATGAGTGATGAAGAAATCCGCGAATTGATGTCTGGTAAAGATTTCAA
GACGGGTGATGCTGAAAGCAAGTTTATTGCTAAGCAGATCGTGCTAGAAGCGTTCAAACCCGTTCGCCGGTCTATTCAAC
GCAATCGCTTCTTAAGCATCCAGGCGCAATATATTCACTTCTTACGGGTTGTGCCACAACTTGTGAAGTTAGCCGATTTT
GATATTACAGAAGAGCAATGGCAAGACCACGTCACTCATTTTGTCGCACAATTGAAGGCTAAGCAGATGACGTTGCAAGA
TGTCACACCTTATCTTCACCTCTACGATTTGATGACGGGTAAAAAAGGCGAACGTGATATGCGTTTTGTCTTCATCGATG
AAATTCAAGATTACACGCCTTATGAATTGGCCTTCTTGAAGCTCCACTTCCCTAAGGCGCGCTTCACATTATTGGGCGAT
TTGAACCAAGCGATTTTCACTAAAGGTAATAGCACAAATCTCTTGCAACAAGTCCAACAATTATTTGATGCCCAAAATAC
AAAAGTGGTGCAATTAACACGTTCATACCGGTCAACGCAACAAGTGACCGACTTTACCAAGGGCTTATTAAAAGGTGGCC
AAGCCATCGAAGCCTTCAACCGAGTTGGCGATAAACCAAACTTGATTGTGCGCCAATCAGAAGCTGAGTTAGTGGCTGAT
GTCAACCGCCAATTAGCAGCAAATGAAGCGGATAAATTATCGACGGCGATTATTACCAAGACATTGGTGCAAGCCCAAGA
ATTGACGAAGATGCTCAAGGAAACGGGAACCAAAGTCACCTTGATTCGTTCCGAAAACCAACGTTTAGCAGCCGGGACAT
TAGTGGTCCCAAGTTTCTTAGCTAAAGGTTTGGAATTCGATGCCATTATTGGCTGGCAAATCAGTGCCGCCAACTACAAT
CATGAAGATCAACGGCAATTGCTCTACACGATTTGTTCAAGAGCAATGCATCGCTTGACCTTGTTAGCCACTGATGCACT
CTCACCACTGATTGATAATGTCGATCCAGAAAAATATACATTAACAAAATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_19)

(214-566)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(700-741)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

38.372

100

0.389

Multiple sequence alignment