Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   BHU02_RS00365 Genome accession   NZ_CP017271
Coordinates   71185..71991 (+) Length   268 a.a.
NCBI ID   WP_016264363.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain TMW 1.1189     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 66185..76991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHU02_RS00345 (BHU02_00345) walK 66675..68573 (+) 1899 WP_025016486.1 cell wall metabolism sensor histidine kinase WalK -
  BHU02_RS00350 (BHU02_00350) yycH 68563..69579 (+) 1017 WP_056936473.1 two-component system activity regulator YycH -
  BHU02_RS00355 (BHU02_00360) - 69630..70699 (+) 1070 WP_112234043.1 IS3-like element IS1163 family transposase -
  BHU02_RS00360 (BHU02_00365) - 70746..71150 (+) 405 Protein_70 two-component system regulatory protein YycI -
  BHU02_RS00365 (BHU02_00370) vicX 71185..71991 (+) 807 WP_016264363.1 MBL fold metallo-hydrolase Regulator
  BHU02_RS00370 (BHU02_00375) htrA 72125..73384 (+) 1260 WP_025016471.1 trypsin-like peptidase domain-containing protein Regulator
  BHU02_RS00375 (BHU02_00380) rlmH 73928..74407 (+) 480 WP_011373797.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  BHU02_RS00380 (BHU02_00385) - 74547..75206 (+) 660 WP_025016470.1 hypothetical protein -
  BHU02_RS00385 (BHU02_00390) add 75263..76288 (-) 1026 WP_025016469.1 adenosine deaminase -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 29695.31 Da        Isoelectric Point: 5.0059

>NTDB_id=167528 BHU02_RS00365 WP_016264363.1 71185..71991(+) (vicX) [Latilactobacillus sakei subsp. sakei strain TMW 1.1189]
MVEKDEMRVSVLASSSSGNTTFIETPTQKILVDAGMSGKRVQDLMHSIGRDLKDVDSLLVTHEHRDHSSGVGVLARRYGI
DVYANQPTWDAMASIIGTVPDEHKHVFEMGKTKTLGDIDVESYGVSHDAAAAQFYQFHHNNRAFAILTDTGYVSDQIRGT
IENADAYLVECNHDLEMLRMGKYPWSLKQRILSDTGHLSNEDGASALMAFMGQQTKRVFLGHLSQENNMKELAHLTVASI
LEQHDYGVGTDFEILDTDPAIADPLFVV

Nucleotide


Download         Length: 807 bp        

>NTDB_id=167528 BHU02_RS00365 WP_016264363.1 71185..71991(+) (vicX) [Latilactobacillus sakei subsp. sakei strain TMW 1.1189]
ATGGTAGAAAAAGATGAAATGCGGGTTAGCGTCTTAGCCAGCAGTAGTTCAGGCAACACAACTTTTATTGAAACACCAAC
TCAAAAAATATTAGTCGACGCGGGAATGAGCGGTAAACGCGTTCAGGATTTAATGCACAGTATCGGTCGGGATTTAAAGG
ATGTTGACAGTCTACTAGTGACGCACGAACATCGCGATCACAGTAGTGGCGTGGGTGTTTTAGCCCGCCGGTATGGGATT
GATGTGTATGCTAACCAACCGACTTGGGATGCGATGGCGTCAATTATTGGGACCGTTCCTGATGAACATAAGCACGTCTT
TGAGATGGGTAAAACCAAAACACTCGGTGATATCGATGTTGAAAGTTATGGCGTTTCACACGATGCCGCTGCGGCGCAAT
TCTATCAATTTCATCATAATAACCGAGCCTTCGCAATCTTAACGGATACGGGTTACGTTTCGGATCAAATCAGAGGCACT
ATCGAAAATGCGGATGCCTACTTGGTGGAATGTAATCACGATTTGGAAATGTTACGAATGGGTAAGTACCCTTGGTCGCT
TAAACAACGTATTCTTAGTGATACGGGTCATCTATCTAACGAAGATGGGGCTTCAGCCTTAATGGCCTTTATGGGACAAC
AAACAAAGCGTGTTTTCCTAGGTCATTTGAGCCAAGAAAACAATATGAAGGAGTTGGCACACTTAACGGTGGCATCAATT
TTAGAACAACATGATTACGGTGTTGGCACGGATTTTGAAATTTTGGATACTGATCCAGCGATTGCGGACCCTTTATTTGT
TGTTTAG

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(17-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

59.459

96.642

0.575