Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   BHU02_RS00085 Genome accession   NZ_CP017271
Coordinates   19180..20055 (+) Length   291 a.a.
NCBI ID   WP_025016425.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain TMW 1.1189     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 14180..25055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHU02_RS00065 (BHU02_00065) - 15064..16371 (-) 1308 WP_099735356.1 nucleobase:cation symporter-2 family protein -
  BHU02_RS00070 (BHU02_00070) rsmG 16773..17513 (+) 741 WP_011373731.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  BHU02_RS00075 (BHU02_00075) noc 17513..18412 (+) 900 WP_016264317.1 nucleoid occlusion protein -
  BHU02_RS00080 (BHU02_00080) - 18424..19190 (+) 767 Protein_15 AAA family ATPase -
  BHU02_RS00085 (BHU02_00085) spo0J 19180..20055 (+) 876 WP_025016425.1 ParB/RepB/Spo0J family partition protein Regulator
  BHU02_RS00090 (BHU02_00090) - 20074..20322 (+) 249 WP_016264320.1 DUF951 domain-containing protein -
  BHU02_RS00095 (BHU02_00095) ychF 20346..21446 (+) 1101 WP_011373736.1 redox-regulated ATPase YchF -
  BHU02_RS00100 (BHU02_00100) - 21464..22138 (+) 675 WP_016264321.1 DUF1129 domain-containing protein -
  BHU02_RS00105 (BHU02_00105) - 22175..22939 (+) 765 WP_025016424.1 prolyl oligopeptidase family serine peptidase -
  BHU02_RS00110 (BHU02_00110) - 23319..23987 (+) 669 WP_016264323.1 HAD hydrolase-like protein -
  BHU02_RS00115 (BHU02_00115) nrdI 23984..24451 (-) 468 WP_016264324.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32425.41 Da        Isoelectric Point: 9.8304

>NTDB_id=167526 BHU02_RS00085 WP_025016425.1 19180..20055(+) (spo0J) [Latilactobacillus sakei subsp. sakei strain TMW 1.1189]
MVNKNGKGLGRGLEAVFSAFEGPNKNRADELVEEIALEDIRPNPYQPRKTFDEAALAELAASIKKSGVFQPIIVRKSING
YELIAGERRFRASKLAGKTTIPAITRQFDEEAMMEIAVLENLQREDLTPLEEAQAYDTLLKKLNLTQAELSERLGKSRPY
IANYLRLLGLPADVKQLLQEGQLSMGQARTLLSLKKKSQISALAKRTIAESLTVRQLEQLVNQMNQTKAAKVAKTKIKSP
YIQASENQLVDKFDTKVNIAMNSKGRGKIEIDYGTVEDLNRILALLDVNID

Nucleotide


Download         Length: 876 bp        

>NTDB_id=167526 BHU02_RS00085 WP_025016425.1 19180..20055(+) (spo0J) [Latilactobacillus sakei subsp. sakei strain TMW 1.1189]
ATGGTCAATAAAAATGGTAAAGGACTCGGTCGAGGACTCGAAGCTGTTTTTTCAGCATTTGAAGGACCCAATAAGAATCG
TGCGGATGAACTCGTTGAAGAGATTGCCCTCGAGGATATTCGTCCTAATCCTTATCAACCACGTAAAACGTTTGATGAAG
CGGCACTAGCGGAACTTGCTGCTTCCATTAAAAAATCAGGCGTTTTCCAACCGATTATTGTGCGTAAAAGCATTAATGGT
TACGAATTAATCGCTGGCGAACGTCGTTTCCGTGCTTCTAAATTAGCTGGCAAAACTACGATTCCAGCGATTACCCGTCA
ATTCGATGAAGAAGCGATGATGGAAATTGCAGTCTTGGAAAATCTTCAACGGGAAGATTTAACACCGCTAGAAGAAGCGC
AAGCCTACGACACCCTTTTGAAGAAGTTAAACTTAACGCAAGCTGAATTGTCAGAACGCTTAGGCAAGAGTCGCCCTTAC
ATTGCCAATTACTTACGCCTGTTGGGCTTGCCAGCAGATGTTAAGCAATTGTTGCAAGAAGGCCAACTCTCAATGGGACA
AGCACGGACGCTTTTATCATTGAAGAAAAAGAGTCAAATTAGCGCCCTCGCCAAGCGGACGATTGCCGAAAGTTTAACGG
TGCGCCAATTAGAACAACTCGTCAACCAAATGAATCAAACCAAAGCGGCTAAAGTCGCTAAGACTAAGATTAAATCACCT
TACATTCAAGCTAGTGAAAACCAATTAGTTGATAAATTCGATACCAAGGTTAATATTGCGATGAACAGTAAGGGCCGGGG
GAAAATCGAAATTGATTACGGCACGGTAGAGGATTTAAACCGAATCTTGGCTTTACTAGATGTCAATATTGATTAG

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(139-166)

HTH domain found in ParB protein (HTH_ParB)

(173-223)

ParB/Sulfiredoxin domain (ParB_N)

(33-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

42.629

86.254

0.368