Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   BFO62_RS14235 Genome accession   NZ_CP017257
Coordinates   3341..3808 (-) Length   155 a.a.
NCBI ID   WP_080179620.1    Uniprot ID   -
Organism   Neisseria meningitidis strain COL-201504-11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFO62_RS00025 (BFO62_00010) lpxC 1261..2184 (-) 924 WP_002220060.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  BFO62_RS14235 pilE 3341..3808 (-) 468 WP_080179620.1 pilin Machinery gene
  BFO62_RS14240 (BFO62_00020) - 3855..4217 (-) 363 Protein_2 pilin -
  BFO62_RS00050 (BFO62_00025) - 4246..4575 (-) 330 WP_002220065.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  BFO62_RS14245 - 4735..4800 (+) 66 Protein_4 transposase -
  BFO62_RS00055 (BFO62_00030) - 4828..5025 (-) 198 WP_021439626.1 DUF2061 domain-containing protein -
  BFO62_RS00060 (BFO62_00035) - 5147..6100 (+) 954 WP_002220067.1 D-2-hydroxyacid dehydrogenase -
  BFO62_RS00065 (BFO62_00040) metG 6178..8232 (-) 2055 WP_002220069.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16553.91 Da        Isoelectric Point: 4.4906

>NTDB_id=167523 BFO62_RS14235 WP_080179620.1 3341..3808(-) (pilE) [Neisseria meningitidis strain COL-201504-11]
MTGFNDAAGVASASDIKGKYVEKVEVKNGVVTAEMKSSGVNKEIQGKKLSLWAKRQDGSVKWFCGQPVARNDKADTDKAD
TDKADTDKADTDKADTDKADTDKADTDKADTDKADTDKADTDKADTDKADTDKADTDKIDTKHLPSTCRDAASAD

Nucleotide


Download         Length: 468 bp        

>NTDB_id=167523 BFO62_RS14235 WP_080179620.1 3341..3808(-) (pilE) [Neisseria meningitidis strain COL-201504-11]
ATGACGGGATTTAATGATGCCGCCGGCGTGGCATCCGCCTCCGACATCAAAGGCAAATATGTTGAGAAAGTTGAAGTCAA
AAACGGCGTCGTTACCGCCGAAATGAAATCAAGCGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCA
AGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTGCGCGCAACGACAAAGCCGACACCGACAAAGCCGAC
ACCGACAAAGCCGACACCGACAAAGCCGACACCGACAAAGCCGACACCGACAAAGCCGACACCGACAAAGCCGACACCGA
CAAAGCCGACACCGACAAAGCCGACACCGACAAAGCCGACACCGACAAAGCCGACACCGACAAAGCCGACACCGACAAAG
CCGACACCGACAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGACGCAGCATCTGCCGATTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(6-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.75

51.613

0.381