Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BFO62_RS11465 Genome accession   NZ_CP017257
Coordinates   1986625..1987131 (+) Length   168 a.a.
NCBI ID   WP_002218101.1    Uniprot ID   A1KW60
Organism   Neisseria meningitidis strain COL-201504-11     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1981625..1992131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFO62_RS11430 (BFO62_10300) - 1981808..1982461 (+) 654 WP_041421978.1 IS1595 family transposase -
  BFO62_RS11435 (BFO62_10305) - 1982674..1984209 (+) 1536 WP_002221654.1 sodium-dependent transporter -
  BFO62_RS11440 - 1984206..1984298 (+) 93 WP_002233157.1 methionine/alanine import family NSS transporter small subunit -
  BFO62_RS11445 (BFO62_10310) lysA 1984358..1985578 (-) 1221 WP_024464967.1 diaminopimelate decarboxylase -
  BFO62_RS11450 (BFO62_10315) lptM 1985589..1985759 (-) 171 WP_002218098.1 LPS translocon maturation chaperone LptM -
  BFO62_RS11455 (BFO62_10320) cyaY 1985830..1986153 (+) 324 WP_002218099.1 iron donor protein CyaY -
  BFO62_RS11460 (BFO62_10325) - 1986184..1986603 (+) 420 WP_002218100.1 DUF2251 domain-containing protein -
  BFO62_RS11465 (BFO62_10330) luxS 1986625..1987131 (+) 507 WP_002218101.1 S-ribosylhomocysteine lyase Regulator
  BFO62_RS11470 (BFO62_10335) polA 1987277..1990069 (+) 2793 WP_002224673.1 DNA polymerase I -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18683.41 Da        Isoelectric Point: 5.5451

>NTDB_id=167516 BFO62_RS11465 WP_002218101.1 1986625..1987131(+) (luxS) [Neisseria meningitidis strain COL-201504-11]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCIPNKEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMQDVGNVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
LDEGLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=167516 BFO62_RS11465 WP_002218101.1 1986625..1987131(+) (luxS) [Neisseria meningitidis strain COL-201504-11]
ATGCCCCTACTAGACAGTTTCAAAGTCGATCACACCCGTATGCATGCCCCCGCCGTACGCGTGGCGAAAACCATGACCAC
GCCCAAAGGCGACACCATTACCGTGTTCGACCTGCGCTTTTGCATTCCCAACAAAGAAATCCTGCCTGAAAAAGGCATAC
ACACGCTGGAGCATTTGTTCGCAGGTTTTATGCGCGACCACTTGAACGGCAACGGCGTGGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTCTACATGAGCCTTATCGGCACGCCTTCCGAACAGCAGGTCGCCGATGCATGGCTCGCCTC
GATGCAGGATGTGGGCAATGTCAAAGACCAAAGCAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTATCAAATGC
ACTCGCTCGCCGAAGCGCAGCAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTGAACAAAAACGAAGAGCTGACG
CTGGATGAAGGGCTGCTGAACGCCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1KW60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

76.647

99.405

0.762

Multiple sequence alignment