Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   BFO62_RS02925 Genome accession   NZ_CP017257
Coordinates   510275..512464 (+) Length   729 a.a.
NCBI ID   WP_076612539.1    Uniprot ID   -
Organism   Neisseria meningitidis strain COL-201504-11     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 505275..517464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFO62_RS02905 (BFO62_02650) - 505760..506938 (+) 1179 WP_002219699.1 MacA family efflux pump subunit -
  BFO62_RS02910 (BFO62_02655) - 507004..508938 (+) 1935 WP_076612538.1 MacB family efflux pump subunit -
  BFO62_RS02920 (BFO62_02660) - 509354..510136 (-) 783 WP_002214390.1 DsbC family protein -
  BFO62_RS02925 (BFO62_02665) priA 510275..512464 (+) 2190 WP_076612539.1 primosomal protein N' Machinery gene
  BFO62_RS02930 (BFO62_02670) - 512511..513584 (-) 1074 WP_002221372.1 NnrS family protein -
  BFO62_RS02935 (BFO62_02675) - 513632..514588 (-) 957 WP_002247793.1 IS110-like element ISNme5 family transposase -

Sequence

Protein


Download         Length: 729 a.a.        Molecular weight: 81027.76 Da        Isoelectric Point: 8.0870

>NTDB_id=167470 BFO62_RS02925 WP_076612539.1 510275..512464(+) (priA) [Neisseria meningitidis strain COL-201504-11]
MIYHRIAVNVPLSDGLLTYSHSDPLPPGTRVLVPFRNKTVVGIVWETDISPDMDTARILSVQTAFSDEPPLPQSWRDLLA
FTSRYYHYPTGQAVFAALPQGLKETRAVEMPQPPLFYALNEAGRAQTPPPARFNKKAALWDALLSGEMTMAALKQVNAQA
VKLIENWAEQGWIETTEAAKPVLRSYHGQASHSEFVLNANQQKASDAIQTALGRFRPFLLYGITGSGKTEVYFDAMAKVL
AQGRQVLFLLPEINLTPQLLKRVGNRFADVPTAVLHSQMAAGRRTQDYLRAMLGQAKLVIGTRLAVFTPLPDVGLIVVDE
EHDGSFKQDNELRYHARDLAVWRAKQSGCPIILGSATPSLESWHKAQSGAYRLLQLTERAHTAAQLPQVDILNVGRLKLD
NGFSPQALQLLKQNFEAGGMSLVYLNRRGFAPALFCSDCGHTFGCPNCSAKMVLHQRARQLRCHHCDHREPVPFKCPDCG
NQDLTAVGHGTQRVEETLRAFLPKAAVVRVDRDSTAHKNDWADLYRRIADNEIDILVGTQMLAKGHDFARLNLVIVLNAD
GSLYSADFRAPERLFAELMQVSGRAGRADKPGKVLIQTQLPEHPVFAAVKAQDYAVFAENELNERQMFAMPPFGFQTAVR
ADAPRVADAMEFLNAAKETLAPLLPESVSQFGAAPMLMVRLAERERAQIFLESTSRQDLHRAVSLWVQVLQQNRDGKIRW
SVDVDPQEA

Nucleotide


Download         Length: 2190 bp        

>NTDB_id=167470 BFO62_RS02925 WP_076612539.1 510275..512464(+) (priA) [Neisseria meningitidis strain COL-201504-11]
ATGATCTACCACCGCATCGCCGTAAACGTGCCGCTTTCAGACGGCCTTTTGACTTATTCCCATTCCGATCCGCTTCCTCC
GGGAACGCGGGTGCTTGTGCCTTTTCGCAATAAAACCGTTGTCGGGATTGTGTGGGAAACGGATATTTCGCCCGATATGG
ATACGGCGCGGATTTTGAGCGTTCAGACGGCCTTTTCGGACGAACCGCCGTTGCCTCAAAGCTGGCGTGATTTGTTGGCG
TTTACGTCGCGTTATTACCACTATCCGACGGGGCAGGCGGTGTTTGCCGCACTGCCGCAAGGTTTGAAGGAAACGCGCGC
GGTGGAAATGCCGCAGCCGCCATTGTTTTATGCTTTAAACGAAGCAGGCAGGGCGCAAACGCCGCCGCCGGCGCGGTTCA
ACAAAAAAGCGGCTTTGTGGGACGCGCTGCTGTCGGGCGAAATGACGATGGCAGCGTTGAAGCAGGTAAACGCGCAGGCG
GTGAAATTAATCGAAAATTGGGCGGAACAGGGTTGGATTGAAACGACGGAAGCGGCGAAACCCGTTTTAAGGTCGTACCA
CGGGCAGGCTTCGCACTCTGAATTTGTGTTGAATGCCAACCAGCAGAAAGCTTCCGATGCCATTCAGACGGCATTGGGAC
GCTTCCGGCCGTTTCTGCTGTACGGCATCACCGGCAGCGGCAAGACCGAAGTGTATTTCGATGCGATGGCGAAAGTGTTG
GCTCAGGGGCGGCAGGTGTTGTTTCTGTTGCCCGAAATCAACCTCACGCCGCAGCTTTTGAAGCGGGTGGGAAATCGTTT
TGCCGACGTGCCGACCGCCGTGTTGCACAGTCAGATGGCGGCAGGCAGGCGCACGCAGGATTATTTGCGCGCGATGTTGG
GGCAGGCGAAATTGGTCATCGGCACGAGGCTGGCGGTGTTCACGCCTTTGCCTGATGTCGGGCTGATTGTGGTCGATGAG
GAACACGACGGCTCGTTTAAACAAGACAACGAATTGCGCTACCACGCCCGCGATTTGGCGGTGTGGCGGGCGAAGCAGAG
CGGCTGCCCGATCATATTGGGCAGCGCGACCCCGAGTTTGGAAAGCTGGCACAAGGCGCAAAGCGGCGCGTACCGCCTGC
TGCAACTGACCGAGCGCGCCCATACCGCTGCGCAACTGCCGCAAGTGGACATCCTCAACGTAGGCCGTCTGAAACTCGAC
AACGGTTTCTCGCCGCAAGCCTTGCAGCTTTTGAAACAGAATTTTGAAGCGGGCGGTATGTCGTTGGTGTACCTCAACCG
TCGCGGTTTCGCGCCAGCGCTGTTTTGCAGCGACTGCGGCCATACCTTCGGCTGCCCGAACTGCTCCGCCAAAATGGTGC
TGCACCAACGTGCCCGCCAACTGCGCTGCCACCACTGCGACCACCGCGAACCCGTCCCGTTCAAATGCCCCGACTGCGGC
AACCAAGATCTGACCGCCGTCGGACACGGCACGCAGCGCGTCGAAGAAACCCTGCGCGCCTTCCTGCCCAAGGCAGCCGT
CGTCCGTGTTGACAGGGACAGCACCGCGCACAAAAACGACTGGGCGGATTTGTACCGCCGCATTGCCGACAACGAAATCG
ACATTCTGGTCGGCACGCAGATGCTCGCCAAAGGGCATGATTTCGCGCGGCTCAACCTCGTTATCGTGTTGAACGCCGAC
GGCAGCCTGTACAGCGCGGACTTTCGCGCCCCGGAAAGGCTGTTCGCCGAGCTGATGCAGGTGTCCGGCAGGGCGGGGCG
CGCCGACAAACCCGGCAAGGTGTTGATACAGACCCAACTGCCCGAACATCCCGTCTTCGCCGCCGTCAAAGCGCAGGATT
ATGCCGTGTTCGCCGAAAACGAATTGAACGAGCGGCAAATGTTCGCGATGCCGCCCTTCGGTTTCCAGACCGCCGTCCGC
GCCGATGCGCCGCGTGTTGCCGATGCGATGGAATTTCTCAACGCCGCCAAAGAAACCCTCGCCCCGCTGTTGCCCGAAAG
CGTTTCCCAGTTTGGCGCGGCTCCGATGCTGATGGTGCGCCTTGCCGAACGCGAACGCGCGCAAATCTTCCTCGAATCAA
CATCCCGACAAGATTTGCACCGAGCCGTGAGTTTGTGGGTGCAGGTGTTGCAGCAAAACAGGGACGGCAAAATCCGATGG
TCGGTGGATGTCGATCCGCAGGAGGCTTGA

Domains

Predicted by InterProScan.

Primosomal protein N C-terminal domain (PriA_C)

(632-726)

DEAD/DEAH box helicase (DEAD)

(207-361)

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-99)

Helicase conserved C-terminal domain (Helicase_C)

(516-588)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(445-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

36.242

100

0.37

Multiple sequence alignment