Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BHW77_RS24635 Genome accession   NZ_CP017251
Coordinates   4791942..4792418 (-) Length   158 a.a.
NCBI ID   WP_001186780.1    Uniprot ID   -
Organism   Escherichia coli strain NADC 5570/86-24/6564 isolate wild     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4786942..4797418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHW77_RS24595 (BHW77_24595) - 4787184..4788035 (+) 852 WP_000168589.1 phosphorothioated DNA-binding restriction endonuclease -
  BHW77_RS24600 (BHW77_24600) - 4788233..4788420 (-) 188 Protein_4721 transposase -
  BHW77_RS24605 (BHW77_24605) - 4788540..4789322 (-) 783 Protein_4722 tyrosine-type recombinase/integrase -
  BHW77_RS33070 - 4789685..4789813 (-) 129 Protein_4723 transcriptional regulator -
  BHW77_RS32295 - 4789789..4789932 (-) 144 Protein_4724 hypothetical protein -
  BHW77_RS24610 (BHW77_24610) - 4790017..4790214 (-) 198 WP_001327226.1 DUF957 domain-containing protein -
  BHW77_RS24615 (BHW77_24615) - 4790234..4790722 (-) 489 WP_000761685.1 DUF5983 family protein -
  BHW77_RS24620 (BHW77_24620) - 4790719..4791096 (-) 378 WP_001094444.1 TA system toxin CbtA family protein -
  BHW77_RS24625 (BHW77_24625) - 4791186..4791554 (-) 369 WP_001285607.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BHW77_RS24630 (BHW77_24630) - 4791634..4791855 (-) 222 WP_000692350.1 DUF987 domain-containing protein -
  BHW77_RS24635 (BHW77_24635) radC 4791942..4792418 (-) 477 WP_001186780.1 RadC family protein Machinery gene
  BHW77_RS24640 (BHW77_24640) - 4792434..4792919 (-) 486 WP_000213716.1 antirestriction protein -
  BHW77_RS24645 (BHW77_24645) - 4793011..4793829 (-) 819 WP_001175175.1 DUF932 domain-containing protein -
  BHW77_RS24650 (BHW77_24650) - 4793919..4794128 (-) 210 WP_032150870.1 DUF905 family protein -
  BHW77_RS24655 (BHW77_24655) - 4794158..4794835 (-) 678 WP_001097301.1 hypothetical protein -
  BHW77_RS24660 (BHW77_24660) - 4794983..4795663 (-) 681 WP_001282919.1 helix-turn-helix transcriptional regulator -
  BHW77_RS24670 (BHW77_24670) - 4795866..4796750 (-) 885 WP_000010408.1 GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17646.21 Da        Isoelectric Point: 6.9859

>NTDB_id=167434 BHW77_RS24635 WP_001186780.1 4791942..4792418(-) (radC) [Escherichia coli strain NADC 5570/86-24/6564 isolate wild]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHESGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=167434 BHW77_RS24635 WP_001186780.1 4791942..4792418(-) (radC) [Escherichia coli strain NADC 5570/86-24/6564 isolate wild]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAGTCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCAGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCGGGTGAAACCCTCTTCACAGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAGGTGATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGGCTTATCACTGAACGTCTGGTACAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTATTCTCCTTTGCCGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392