Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   AL501_RS04680 Genome accession   NZ_CP014023
Coordinates   946894..947610 (+) Length   238 a.a.
NCBI ID   WP_002461418.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain FDAARGOS_143     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 941894..952610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL501_RS04655 (AL501_04585) - 942688..943311 (+) 624 WP_062077860.1 nitroreductase family protein -
  AL501_RS04660 (AL501_04590) - 943446..944231 (+) 786 WP_002477923.1 carbon-nitrogen family hydrolase -
  AL501_RS04665 (AL501_04595) - 944859..945425 (+) 567 WP_037540641.1 accessory gene regulator AgrB -
  AL501_RS04670 (AL501_04600) agrD 945428..945571 (+) 144 WP_002461416.1 cyclic lactone autoinducer peptide AgrD -
  AL501_RS04675 (AL501_04605) agrC 945592..946881 (+) 1290 WP_062077862.1 quorum-sensing sensor histidine kinase AgrC -
  AL501_RS04680 (AL501_04610) agrA 946894..947610 (+) 717 WP_002461418.1 quorum-sensing response regulator AgrA Regulator
  AL501_RS04685 (AL501_04615) - 947702..948676 (-) 975 WP_062077864.1 carbohydrate kinase family protein -
  AL501_RS04690 (AL501_04620) - 948677..950161 (-) 1485 WP_062077866.1 sucrose-6-phosphate hydrolase -
  AL501_RS04695 (AL501_04625) - 950261..951211 (-) 951 WP_062077868.1 LacI family DNA-binding transcriptional regulator -
  AL501_RS04700 (AL501_04630) - 951311..952555 (-) 1245 WP_002477917.1 ammonium transporter -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27935.92 Da        Isoelectric Point: 5.9140

>NTDB_id=167414 AL501_RS04680 WP_002461418.1 946894..947610(+) (agrA) [Staphylococcus lugdunensis strain FDAARGOS_143]
MKIYICEDDVKQRENMVEIINNYIMIEEKPMEIALATDNPYEILKMSKENEDVGCYFLDIQLEADINGIKLGSEIRKYDP
IGNIIFVTSHSELTYLTFVYKVSAMDFIFKDDPAELKTRIIDCLETAHTRLKLLSKERTVETIELKRGSNSVYVQYDEVM
FFESSTNSHRLIAHLDNRQIEFYGNLKQISQIDDRFFRCHNSFVVNRHNISSINSKERVVYFKNGEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=167414 AL501_RS04680 WP_002461418.1 946894..947610(+) (agrA) [Staphylococcus lugdunensis strain FDAARGOS_143]
ATGAAGATTTACATTTGTGAAGATGATGTTAAACAACGTGAAAATATGGTTGAGATCATCAATAACTATATCATGATTGA
AGAAAAACCAATGGAAATTGCTTTAGCTACAGATAATCCTTATGAAATTTTAAAAATGTCAAAGGAAAATGAGGATGTTG
GTTGTTATTTTTTAGATATTCAATTAGAAGCTGACATAAACGGTATCAAGTTAGGTAGCGAAATAAGAAAGTATGATCCG
ATAGGTAACATAATTTTTGTTACAAGTCATAGTGAGCTGACATATTTAACTTTTGTTTACAAAGTATCGGCTATGGATTT
TATTTTTAAAGATGACCCTGCCGAACTTAAAACTCGTATTATCGATTGCCTTGAAACCGCACATACGCGCTTAAAGTTAT
TGTCAAAAGAACGTACCGTTGAAACGATAGAGCTTAAGCGCGGTAGTAATTCTGTATATGTGCAATATGATGAAGTGATG
TTTTTTGAATCATCAACAAATTCACATCGATTGATTGCACATTTAGATAATCGTCAAATTGAGTTTTATGGTAATCTAAA
ACAAATTAGTCAAATCGATGATCGTTTCTTTAGATGCCATAATAGTTTTGTTGTCAATCGACACAATATCTCTTCAATCA
ATTCAAAAGAACGTGTTGTATATTTTAAAAATGGTGAACATTGTTATGCATCAGTACGCAATGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

86.555

100

0.866

Multiple sequence alignment