Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AL492_RS04455 Genome accession   NZ_CP014021
Coordinates   980889..982235 (+) Length   448 a.a.
NCBI ID   WP_024568384.1    Uniprot ID   X5K7C2
Organism   Elizabethkingia anophelis strain FDAARGOS_134     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 975889..987235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL492_RS04435 (AL492_04435) - 976415..976993 (+) 579 WP_078412352.1 ribonuclease HII -
  AL492_RS04445 (AL492_04445) yidC 977263..979044 (-) 1782 WP_104916400.1 membrane protein insertase YidC -
  AL492_RS04450 (AL492_04450) - 979053..980672 (-) 1620 WP_009084926.1 CTP synthase -
  AL492_RS04455 (AL492_04455) radA 980889..982235 (+) 1347 WP_024568384.1 DNA repair protein RadA Machinery gene
  AL492_RS04460 (AL492_04460) - 982239..982919 (+) 681 WP_104916401.1 class I SAM-dependent methyltransferase -
  AL492_RS04465 (AL492_04465) - 982926..983630 (+) 705 WP_061890147.1 VanW family protein -
  AL492_RS04475 (AL492_04475) - 983955..984788 (+) 834 WP_009095074.1 SDR family oxidoreductase -
  AL492_RS04480 (AL492_04480) - 984785..985759 (+) 975 WP_104916402.1 NAD-dependent epimerase/dehydratase family protein -
  AL492_RS04485 (AL492_04485) - 986158..986733 (+) 576 WP_104916403.1 ACP phosphodiesterase -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49845.33 Da        Isoelectric Point: 6.7597

>NTDB_id=167353 AL492_RS04455 WP_024568384.1 980889..982235(+) (radA) [Elizabethkingia anophelis strain FDAARGOS_134]
MAKVKTAYYCQNCGTQYPQWHGQCKNCGEWNTLVEEVIEKSTSKNYSGEKKQHIINIIEVNAQEEPRITTPSDELNRVLG
GGIVLGSVTLIGGEPGIGKSTLLLQLALKMRKRVLYVSGEESASQIKMRADRLTDLQNPECFLFTETSVDKILHEAKKLQ
PQFMILDSIQTLHSSLIESSPGTVSQIRECSSEIIKFAKETNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNHL
FRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRSC
TGFDAKRLNMLLAVLEKRAGFQLGSKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEKYCFAGEIGLSGEIRPVP
QIEHRITEAEKLGYDKIYVSNLNKIPKRKFAIKIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=167353 AL492_RS04455 WP_024568384.1 980889..982235(+) (radA) [Elizabethkingia anophelis strain FDAARGOS_134]
GTGGCAAAGGTCAAAACGGCATATTACTGTCAAAATTGCGGAACTCAGTATCCGCAGTGGCACGGACAGTGCAAAAATTG
TGGAGAATGGAATACTTTGGTTGAAGAAGTTATAGAAAAATCGACTTCAAAAAATTATTCCGGAGAAAAGAAGCAACATA
TTATTAACATTATCGAGGTCAACGCCCAGGAAGAACCCAGAATTACAACCCCGAGCGATGAGCTGAACCGTGTATTGGGA
GGTGGAATTGTACTAGGCTCTGTTACCTTAATTGGTGGTGAACCGGGAATCGGGAAATCTACCCTTTTGCTTCAGCTGGC
ACTAAAAATGCGCAAACGTGTTTTGTATGTCTCCGGAGAAGAAAGTGCTTCACAAATTAAAATGCGTGCAGACCGTCTTA
CCGATCTCCAAAATCCGGAGTGCTTCCTTTTTACAGAAACTTCTGTGGACAAAATTCTGCATGAAGCGAAAAAGCTTCAG
CCTCAGTTTATGATTCTGGACTCTATACAGACATTACATTCCAGCCTTATAGAAAGCTCACCGGGCACAGTTTCTCAGAT
TCGGGAATGTTCTTCAGAAATTATAAAGTTTGCCAAAGAAACCAATACTCCCGTGTTTCTGGTAGGCCATATCACCAAAG
ACGGACAAATTGCAGGTCCGAAAGTTCTGGAACATATGGTGGATGTGGTTCTAAATTTCGATGGCGACAGAAATCACCTT
TTCAGGTTGCTAAGAGCTAATAAAAACCGTTTTGGCTCTACGTCCGAAATTGGTATTTATGAAATGATATCACAGGGCCT
GAAAGAAATTAAAAATCCTTCTGAAATACTGATTACCAAAAAATTTGAAGAGCTATCCGGCAATTCTGTAGCTGTAACTT
TGGAAGGAAACCGCCCAATGCTACTGGAAATCCAGGCTTTGGTAAGTACCGCAGTATATGGTACTCCACAGAGAAGCTGC
ACAGGTTTCGATGCAAAAAGGCTCAATATGCTTCTGGCAGTTCTGGAGAAACGCGCAGGCTTCCAGCTTGGATCAAAAGA
TGTATTCCTGAATATAACCGGCGGCATCAAAACTGACGATCCGGCACTGGATTTAGCAGTTGTAGCCTCTATTCTGTCTT
CCAATGAAGATATTGCTATTTCCGAGAAGTATTGCTTTGCAGGAGAAATAGGTCTTAGCGGAGAAATACGACCTGTTCCT
CAGATTGAACACCGTATCACAGAGGCCGAAAAACTGGGATATGATAAAATCTACGTTTCCAATCTGAATAAAATACCTAA
AAGGAAATTTGCGATAAAGATTGAAGAAGTCAGCAAAATCGAAGATTTTCATGAAAGACTATTCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(337-421)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5K7C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

48.578

100

0.496
  radA Streptococcus pneumoniae Rx1

48.578

100

0.496
  radA Streptococcus pneumoniae R6

48.578

100

0.496
  radA Streptococcus pneumoniae TIGR4

48.578

100

0.496
  radA Streptococcus mitis NCTC 12261

48.571

100

0.493
  radA Streptococcus mitis SK321

48.352

100

0.491
  radA Bacillus subtilis subsp. subtilis str. 168

49.188

96.205

0.473

Multiple sequence alignment