Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | BHW76_RS11335 | Genome accession | NZ_CP017249 |
| Coordinates | 2222674..2223150 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186738.1 | Uniprot ID | B7UP40 |
| Organism | Escherichia coli strain NADC 5570/86-24/6565 isolate mutant | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2217674..2228150
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BHW76_RS11310 (BHW76_11310) | - | 2218954..2219859 (+) | 906 | WP_000203541.1 | diguanylate cyclase regulator RdcB family protein | - |
| BHW76_RS11315 (BHW76_11315) | - | 2219856..2220924 (+) | 1069 | Protein_2170 | patatin-like phospholipase family protein | - |
| BHW76_RS11325 (BHW76_11325) | - | 2221264..2222082 (+) | 819 | WP_001234682.1 | DUF932 domain-containing protein | - |
| BHW76_RS11330 (BHW76_11330) | - | 2222173..2222658 (+) | 486 | WP_000214398.1 | antirestriction protein | - |
| BHW76_RS11335 (BHW76_11335) | radC | 2222674..2223150 (+) | 477 | WP_001186738.1 | JAB domain-containing protein | Machinery gene |
| BHW76_RS11340 (BHW76_11340) | - | 2223213..2223434 (+) | 222 | WP_001220314.1 | DUF987 domain-containing protein | - |
| BHW76_RS11350 (BHW76_11350) | - | 2223597..2223971 (+) | 375 | WP_001280954.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| BHW76_RS11355 (BHW76_11355) | - | 2224018..2224392 (+) | 375 | WP_000854914.1 | TA system toxin CbtA family protein | - |
| BHW76_RS11360 (BHW76_11360) | - | 2224389..2224880 (+) | 492 | WP_000976853.1 | DUF5983 family protein | - |
| BHW76_RS11365 (BHW76_11365) | - | 2224892..2225089 (+) | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| BHW76_RS11370 (BHW76_11370) | - | 2225174..2226016 (+) | 843 | WP_001280481.1 | DUF4942 domain-containing protein | - |
| BHW76_RS11380 (BHW76_11380) | ghrA | 2226487..2227425 (+) | 939 | WP_000351284.1 | glyoxylate/hydroxypyruvate reductase GhrA | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17673.28 Da Isoelectric Point: 6.9242
>NTDB_id=167327 BHW76_RS11335 WP_001186738.1 2222674..2223150(+) (radC) [Escherichia coli strain NADC 5570/86-24/6565 isolate mutant]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=167327 BHW76_RS11335 WP_001186738.1 2222674..2223150(+) (radC) [Escherichia coli strain NADC 5570/86-24/6565 isolate mutant]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
54.867 |
71.519 |
0.392 |