Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AL533_RS16340 Genome accession   NZ_CP014019
Coordinates   3402359..3403846 (+) Length   495 a.a.
NCBI ID   WP_104919139.1    Uniprot ID   A0A2L1VL12
Organism   Acinetobacter nosocomialis strain FDAARGOS_129     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3397359..3408846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL533_RS16315 (AL533_16315) ribD 3398276..3399361 (-) 1086 WP_104919138.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  AL533_RS16320 (AL533_16320) nrdR 3399377..3399835 (-) 459 WP_004710970.1 transcriptional regulator NrdR -
  AL533_RS16325 (AL533_16325) - 3399996..3401390 (-) 1395 WP_031956165.1 ammonium transporter -
  AL533_RS16330 (AL533_16330) glnK 3401448..3401786 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  AL533_RS16335 (AL533_16335) - 3402066..3402293 (+) 228 WP_002048939.1 accessory factor UbiK family protein -
  AL533_RS16340 (AL533_16340) comM 3402359..3403846 (+) 1488 WP_104919139.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AL533_RS16345 (AL533_16345) - 3403876..3405300 (-) 1425 WP_104919140.1 PLP-dependent aminotransferase family protein -
  AL533_RS16350 (AL533_16350) - 3405412..3406188 (+) 777 WP_004883678.1 aldolase -
  AL533_RS16355 (AL533_16355) - 3406204..3407082 (+) 879 WP_104919141.1 dihydrodipicolinate synthase family protein -
  AL533_RS16360 (AL533_16360) - 3407125..3407946 (-) 822 WP_002048960.1 TorF family putative porin -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54672.65 Da        Isoelectric Point: 7.7211

>NTDB_id=167316 AL533_RS16340 WP_104919139.1 3402359..3403846(+) (comM) [Acinetobacter nosocomialis strain FDAARGOS_129]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPISGALTLAMACQQAQHKIVLPQDNSQDISHLPNLECYPVSHL
KEVCEHFLGNTKLSQVQSSSRSNYMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHIFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQIKRQNCLNQALSPKQLEQFAVLDDTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLSQSEMIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=167316 AL533_RS16340 WP_104919139.1 3402359..3403846(+) (comM) [Acinetobacter nosocomialis strain FDAARGOS_129]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGCTTGCATGCGCCTCTCATTGAAGTAGAGGTACATGTGAGTCA
AGGCTTACCTTCTCTAACAATCGTAGGGCTTGCTGAAGCAGCAGTCAGGGAGAGTAAGGACAGGGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAGTTTCCGACTAAACGGCTGACTATTAATCTTGCTCCCGCAGATTTGCCCAAAGATGGTTCACGT
TTAGATTTACCGATTGCATTAGGGATATTAATTGCCTCAGGTCAGCTTCCAGAGAACTGCACTGAAGACTTTGAATTTAT
TGGAGAGTTAGCACTAGATGGTCATGTAAGACCTATTTCAGGTGCTTTAACTTTGGCAATGGCCTGCCAACAAGCCCAGC
ATAAAATTGTTTTACCCCAAGATAATAGTCAAGATATTAGTCATTTACCAAATCTTGAGTGTTATCCGGTTAGTCATTTA
AAAGAAGTTTGTGAACACTTTTTAGGAAATACCAAGCTATCTCAGGTGCAATCATCTTCCCGCTCAAATTACATGCCGTA
TAAATTTGACCTTGCTGATGTAAAAGGTCAGCTACGTCCACGTCGTGCACTGGAAATTGCAGCTGCTGGAGGGCACTCCC
TGCTCTTTAAAGGACCACCGGGTACAGGTAAGACTTTACTCGCCTCACGTCTTCCTTCAATTTTACCACCACTTTCTACT
CAAGAAACGCTTGAAGTTGCGAGTATTTATTCGATTTCAAATACACCGCATATTTTTGGACAGCGCCCTTTTCGTGCACC
CCACCATACAGCCTCAGCAATTGCACTAGTTGGGGGCGGTTCTCATCCTAAACCGGGTGAAATTACCTTATCTCACTTAG
GTGTTCTATTCTTAGATGAATTACCCGAGTTTGACCGCAAAGTATTAGAAGTCTTACGCCAGCCGCTTGAGTCAAAAGAA
ATTATTATTTCACGGGCAGCCCGGCAAATTACTTATCCCGCAAATTTTCAGCTCATTGCAGCGATGAACCCCTGCCCATG
TGGTTACGCATTTAATCAAGACAGTCGTTGTCAGTGTTCGCCCGAAAGTATTAAACGTTATCAGAACCGTATATCGGGGC
CATTACTTGACCGCATCGATTTACATATCGATGTACCGCCATTAAAAGCTCAGGAACTACAAGACCCAACACCTGCTGAG
GATTCGACAACTGTGCGACAACGTGTGATTTATGCCTATGAACAACAAATAAAAAGGCAGAATTGTTTAAATCAAGCGCT
TTCACCAAAACAATTAGAACAATTCGCTGTCCTAGATGACACGTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCACGTGCTTATCATCGTGTTTTACGGGTTGCTCGCACCATTGCCGATTTGTCTCAAAGTGAGATGATTCAA
AGTCCTCACCTTACAGAAGCACTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L1VL12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.21

100

0.513
  comM Glaesserella parasuis strain SC1401

50.8

100

0.513
  comM Haemophilus influenzae Rd KW20

49.098

100

0.495
  comM Legionella pneumophila str. Paris

48.193

100

0.485
  comM Legionella pneumophila strain ERS1305867

48.193

100

0.485
  comM Vibrio campbellii strain DS40M4

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47

100

0.475

Multiple sequence alignment