Detailed information NTG0167296

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: BHW76_RS00645
• Genome accession: NZ_CP017249
• Coordinates: 113719..114387 (+)
• Length: 222 a.a.
• NCBI ID: WP_001297375.1
• Uniprot ID: P65957
• Organism: Escherichia coli strain NADC 5570/86-24/6565 isolate mutant
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 108719..119387

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BHW76_RS00615 (BHW76_00615)	yicC	108738..109601 (-)	864	WP_000621336.1	YicC/YloC family endoribonuclease	-
BHW76_RS00620 (BHW76_00620)	rph	109728..110444 (+)	717	WP_001247093.1	ribonuclease PH	-
BHW76_RS00625 (BHW76_00625)	pyrE	110510..111151 (+)	642	WP_000806161.1	orotate phosphoribosyltransferase	-
BHW76_RS00630 (BHW76_00630)	slmA	111188..111784 (-)	597	WP_000818601.1	nucleoid occlusion factor SlmA	-
BHW76_RS00635 (BHW76_00635)	dut	111891..112349 (-)	459	WP_000976070.1	dUTP diphosphatase	-
BHW76_RS00640 (BHW76_00640)	coaBC	112327..113547 (-)	1221	WP_000050139.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
BHW76_RS00645 (BHW76_00645)	radC	113719..114387 (+)	669	WP_001297375.1	RadC family protein	Machinery gene
BHW76_RS00650 (BHW76_00650)	rpmB	114604..114840 (+)	237	WP_000091955.1	50S ribosomal protein L28	-
BHW76_RS00655 (BHW76_00655)	rpmG	114861..115028 (+)	168	WP_001051798.1	50S ribosomal protein L33	-
BHW76_RS00660 (BHW76_00660)	mutM	115126..115935 (+)	810	WP_001114533.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
BHW76_RS00665 (BHW76_00665)	coaD	115974..116453 (-)	480	WP_001171866.1	pantetheine-phosphate adenylyltransferase	-
BHW76_RS00670 (BHW76_00670)	waaA	116461..117738 (-)	1278	WP_000891564.1	lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase	-
BHW76_RS00675 (BHW76_00675)	rfaQ	118151..119209 (+)	1059	WP_000360402.1	lipopolysaccharide core heptosyltransferase RfaQ	-

Sequence

Protein

• Length: 222 a.a.
• Molecular weight: 25258.35 Da
• Isoelectric Point: 7.9748

>NTDB_id=167296 BHW76_RS00645 WP_001297375.1 113719..114387(+) (radC) [Escherichia coli strain NADC 5570/86-24/6565 isolate mutant]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide

• Length: 669 bp

>NTDB_id=167296 BHW76_RS00645 WP_001297375.1 113719..114387(+) (radC) [Escherichia coli strain NADC 5570/86-24/6565 isolate mutant]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACTGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGACGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-220)

• UPF0758 N-terminal (UPF0758_N) (9-77)

3D structure

• AlphaFold DB: P65957

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	49.55	100	0.496