Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AL486_RS06075 Genome accession   NZ_CP014018
Coordinates   1337748..1339235 (-) Length   495 a.a.
NCBI ID   WP_042114309.1    Uniprot ID   A0A0B5FF78
Organism   Pandoraea apista strain FDAARGOS_126     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1332748..1344235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL486_RS06045 (AL486_06045) mutY 1332803..1333975 (+) 1173 WP_104926990.1 A/G-specific adenine glycosylase -
  AL486_RS06050 (AL486_06050) rapZ 1333977..1334858 (-) 882 WP_042114302.1 RNase adapter RapZ -
  AL486_RS06055 (AL486_06055) - 1335031..1335357 (-) 327 WP_042114303.1 PsiF family protein -
  AL486_RS06060 (AL486_06060) hprK 1335517..1336482 (-) 966 WP_010804807.1 HPr(Ser) kinase/phosphatase -
  AL486_RS06065 (AL486_06065) ptsN 1336560..1337015 (-) 456 WP_042114306.1 PTS IIA-like nitrogen regulatory protein PtsN -
  AL486_RS06070 (AL486_06070) raiA 1337252..1337605 (-) 354 WP_039373742.1 ribosome-associated translation inhibitor RaiA -
  AL486_RS06075 (AL486_06075) rpoN/rpoN1 1337748..1339235 (-) 1488 WP_042114309.1 RNA polymerase factor sigma-54 Machinery gene
  AL486_RS06080 (AL486_06080) lptB 1339330..1340100 (-) 771 WP_042117810.1 LPS export ABC transporter ATP-binding protein -
  AL486_RS06085 (AL486_06085) lptA 1340126..1340788 (-) 663 WP_224787366.1 lipopolysaccharide transport periplasmic protein LptA -
  AL486_RS06090 (AL486_06090) lptC 1340824..1341483 (-) 660 WP_104926991.1 LPS export ABC transporter periplasmic protein LptC -
  AL486_RS06095 (AL486_06095) - 1341508..1341993 (-) 486 WP_224787367.1 HAD hydrolase family protein -
  AL486_RS06100 (AL486_06100) - 1342092..1343072 (-) 981 WP_048628611.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 55108.95 Da        Isoelectric Point: 5.1872

>NTDB_id=167278 AL486_RS06075 WP_042114309.1 1337748..1339235(-) (rpoN/rpoN1) [Pandoraea apista strain FDAARGOS_126]
MKPTLQLRTSQHLTLTPQLQQSIRLLQLSTLELQQEVEHALTQNPMLEREDDWLAGSVRVGTDGSLRNERATSVSSTNDG
AESANGRDEARELDGETRFDDNSQDNGGDWSLNDFARSGSTSDDDDNARPQLHVDHPNLREHLLAQLRLTKAGPRDRALV
AFLIESLDEDGYLGTTLEEIEAEMPEELALETEEINAALALLQSFDPAGVGARSPAECLRLQLQRLPASSVRTLSLRIVS
DHLELLAARDYTRLRRVLGASEDGLRAAHQLIRSLDPFPGAAYGTPQADYVVPDVLVRRQGSGWTAELNPDVMPRLRINE
MYARILRNNRNDPGTGNLQQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFTHGEIGMRPLVLREIADTLGLHESTI
SRVTTSKYMLTPFGTFELKYFFGSHVATEAGGAASSTAIRALIKQLIGAEDPQSPLSDSRIAELLAEQGFVVARRTVAKY
REAMRIPAVNLRKSL

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=167278 AL486_RS06075 WP_042114309.1 1337748..1339235(-) (rpoN/rpoN1) [Pandoraea apista strain FDAARGOS_126]
ATGAAACCGACTCTTCAACTCCGCACCTCGCAGCACCTGACCCTCACGCCGCAGTTGCAGCAATCGATCCGGTTGTTGCA
ACTGTCTACGCTCGAACTTCAGCAGGAAGTCGAGCACGCCCTCACCCAGAACCCGATGCTCGAACGCGAGGACGATTGGC
TCGCGGGCTCGGTACGTGTGGGCACGGACGGGTCGCTGCGCAACGAGCGGGCAACGTCGGTCAGCAGCACGAACGACGGC
GCCGAGTCCGCCAACGGCCGTGACGAAGCCCGCGAACTCGACGGCGAGACCCGGTTCGACGACAACTCGCAAGACAATGG
CGGCGACTGGAGCCTGAACGACTTCGCCCGCTCCGGCAGCACCTCGGACGACGACGACAACGCGCGTCCGCAGCTGCACG
TCGACCATCCCAACCTTCGCGAACACCTGCTGGCGCAGTTGCGCCTGACCAAGGCCGGTCCGCGCGACCGTGCGCTGGTG
GCGTTCCTGATCGAATCGCTCGACGAAGACGGCTATCTCGGCACCACGCTCGAAGAAATCGAGGCAGAAATGCCCGAAGA
ACTGGCGCTGGAGACCGAGGAAATCAACGCCGCGCTCGCGCTGCTGCAAAGCTTCGACCCGGCGGGTGTGGGCGCCCGCA
GCCCGGCCGAATGCCTTCGCCTGCAACTCCAGCGCCTGCCTGCGAGTAGCGTTCGCACGCTCTCGCTGCGCATCGTGAGC
GATCACCTGGAACTGCTCGCCGCACGCGATTACACCCGTCTGCGCCGCGTGCTGGGGGCGAGCGAAGACGGCTTGCGTGC
CGCCCATCAACTGATTCGTTCGCTCGATCCGTTCCCCGGGGCCGCGTATGGCACGCCGCAGGCCGATTACGTCGTGCCCG
ATGTGCTCGTGCGCAGACAGGGCAGCGGCTGGACCGCCGAGCTCAATCCCGACGTCATGCCGCGCCTGCGCATCAACGAG
ATGTACGCGCGCATTCTGCGCAATAACCGCAACGACCCGGGTACCGGCAACTTGCAACAACAACTTCAGGAAGCCCGCTG
GCTGATCAAAAACATCCAGCAGCGCTTCGATACGATCCTGCGCGTGGCGCAAGCGATCGTCGAGCGTCAAAAGAACTTCT
TCACGCATGGCGAAATCGGCATGCGGCCCTTGGTTTTACGCGAGATTGCTGATACGCTGGGTTTACACGAATCCACGATT
TCACGCGTGACCACCAGTAAGTACATGCTCACTCCATTTGGAACGTTTGAGCTGAAGTACTTCTTTGGTTCACATGTTGC
AACGGAAGCCGGGGGCGCAGCGTCATCGACCGCCATCCGCGCACTCATCAAGCAACTCATAGGAGCAGAAGACCCGCAGA
GCCCCCTTTCCGACAGCCGTATCGCGGAACTGCTGGCAGAGCAAGGGTTCGTGGTGGCGCGGCGCACCGTCGCGAAATAC
CGCGAGGCCATGCGAATTCCGGCAGTGAACTTGCGCAAATCTTTGTAG

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(133-322)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(338-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

67.864

100

0.687

Multiple sequence alignment