Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AL479_RS18030 Genome accession   NZ_CP014015
Coordinates   3751579..3752208 (+) Length   209 a.a.
NCBI ID   WP_061077058.1    Uniprot ID   -
Organism   Citrobacter amalonaticus strain FDAARGOS_122     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3746579..3757208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL479_RS18010 (AL479_17145) - 3746966..3748726 (-) 1761 WP_061077055.1 AAA family ATPase -
  AL479_RS18015 (AL479_17150) matP 3748912..3749364 (+) 453 WP_061077056.1 macrodomain Ter protein MatP -
  AL479_RS18020 (AL479_17155) ompA 3749444..3750496 (-) 1053 WP_061078005.1 porin OmpA -
  AL479_RS18025 (AL479_17160) sulA 3750852..3751361 (-) 510 WP_061077057.1 SOS-induced cell division inhibitor SulA -
  AL479_RS18030 (AL479_17165) sxy/tfoX 3751579..3752208 (+) 630 WP_061077058.1 TfoX/Sxy family DNA transformation protein Regulator
  AL479_RS18035 (AL479_17170) yccS 3752162..3754324 (-) 2163 WP_061077059.1 YccS family putative transporter -
  AL479_RS18040 (AL479_17175) - 3754331..3754789 (-) 459 WP_043001155.1 YccF domain-containing protein -
  AL479_RS18045 (AL479_17180) helD 3754913..3756967 (+) 2055 WP_061077060.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24258.21 Da        Isoelectric Point: 9.0253

>NTDB_id=167222 AL479_RS18030 WP_061077058.1 3751579..3752208(+) (sxy/tfoX) [Citrobacter amalonaticus strain FDAARGOS_122]
MKIHSYDRIYKSQEYLSSLGTIHFRSLFGSYSLTIRNTVFAMVANGELYLRACEESVQYCVQHSPVWLTFLKRGRPVMLN
YYQVDDSLWRDQQQLIQLSKFSLDAALQEKLSRCSQQRLKDLPNMTFHLESLLNEAGIYDVATLRMLGAKMCWLRLRQMN
KSITDKVLFNLEGAIYGIHEAALPAIRRQELALWVKSLSPVPMSVEKIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=167222 AL479_RS18030 WP_061077058.1 3751579..3752208(+) (sxy/tfoX) [Citrobacter amalonaticus strain FDAARGOS_122]
ATGAAAATTCACTCCTATGACAGGATCTATAAATCACAGGAATATTTATCTTCTCTGGGGACGATCCACTTCCGCTCACT
GTTTGGCAGCTACAGTCTGACTATCCGGAATACCGTTTTTGCGATGGTCGCCAATGGGGAGCTCTATCTGCGGGCTTGTG
AGGAAAGCGTACAGTATTGCGTGCAACATTCCCCAGTCTGGCTGACATTTCTTAAACGCGGGCGTCCGGTCATGCTTAAC
TATTATCAGGTCGATGACAGTCTTTGGCGCGACCAGCAACAGTTGATCCAGTTATCGAAGTTTTCGCTGGATGCTGCGTT
GCAAGAGAAGTTGTCCCGCTGTTCTCAGCAGCGGCTTAAGGATCTCCCCAATATGACCTTTCATCTGGAGAGTTTGCTGA
ATGAGGCGGGGATCTACGACGTCGCCACCCTGCGAATGCTGGGCGCTAAAATGTGCTGGTTGCGACTTCGACAGATGAAT
AAATCCATTACTGACAAGGTGCTGTTTAATCTTGAAGGGGCCATTTATGGCATTCATGAGGCGGCGCTCCCGGCGATACG
CCGCCAGGAGCTTGCTCTGTGGGTTAAGTCGCTTTCGCCGGTGCCGATGTCGGTGGAGAAGATTGAGTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

70.5

95.694

0.675

Multiple sequence alignment