Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   BL1202_RS00345 Genome accession   NZ_CP017247
Coordinates   64315..64545 (+) Length   76 a.a.
NCBI ID   WP_003178210.1    Uniprot ID   A0A6I1MI94
Organism   Bacillus licheniformis strain BL1202     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 59315..69545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BL1202_RS00315 (BL1202_00063) ridA 59372..59749 (+) 378 WP_003178196.1 2-iminobutanoate/2-iminopropanoate deaminase -
  BL1202_RS00320 (BL1202_00064) spoVG 59929..60222 (+) 294 WP_003178198.1 septation regulator SpoVG -
  BL1202_RS00325 (BL1202_00065) glmU 60527..61897 (+) 1371 WP_003178200.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  BL1202_RS00330 (BL1202_00066) - 61918..62868 (+) 951 WP_069500205.1 ribose-phosphate diphosphokinase -
  BL1202_RS00335 (BL1202_00067) - 62949..63575 (+) 627 WP_003178205.1 50S ribosomal protein L25/general stress protein Ctc -
  BL1202_RS00340 (BL1202_00068) pth 63692..64258 (+) 567 WP_021837375.1 aminoacyl-tRNA hydrolase -
  BL1202_RS00345 (BL1202_00069) subA/fin 64315..64545 (+) 231 WP_003178210.1 anti-sigma-F factor Fin family protein Machinery gene
  BL1202_RS00350 (BL1202_00070) mfd 64610..68143 (+) 3534 WP_069500206.1 transcription-repair coupling factor -
  BL1202_RS00355 (BL1202_00071) spoVT 68281..68817 (+) 537 WP_003178213.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8950.85 Da        Isoelectric Point: 5.3733

>NTDB_id=167155 BL1202_RS00345 WP_003178210.1 64315..64545(+) (subA/fin) [Bacillus licheniformis strain BL1202]
MALHYYCRHCGVKVGSLDHSYVNSEQLGFNHLTNDERNDMISYMDNGDLHVKTICEDCQEALERNPDYHQYHSFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=167155 BL1202_RS00345 WP_003178210.1 64315..64545(+) (subA/fin) [Bacillus licheniformis strain BL1202]
ATGGCTTTACATTATTATTGCCGGCATTGCGGCGTTAAAGTCGGAAGTCTTGACCATTCTTATGTAAACAGTGAACAGTT
AGGCTTTAACCACTTAACAAATGATGAAAGAAACGATATGATTTCTTATATGGATAATGGGGATTTACACGTGAAGACGA
TATGTGAAGATTGTCAAGAAGCGCTTGAGCGAAACCCGGATTATCACCAATATCATTCATTTATTCAATAG

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MI94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

77.632

100

0.776