Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RJF2_RS08880 Genome accession   NZ_CP014008
Coordinates   1835820..1836416 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae subsp. pneumoniae strain RJF293     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1830820..1841416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJF2_RS08855 (RJF2_08855) - 1831013..1832770 (-) 1758 WP_004147851.1 Lon protease family protein -
  RJF2_RS08860 (RJF2_08860) matP 1832956..1833408 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  RJF2_RS08865 (RJF2_08865) ompA 1833540..1834610 (-) 1071 WP_002898408.1 porin OmpA -
  RJF2_RS08870 (RJF2_08870) sulA 1834962..1835471 (-) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  RJF2_RS08875 (RJF2_08875) - 1835514..1835729 (-) 216 WP_009485781.1 hypothetical protein -
  RJF2_RS08880 (RJF2_08880) sxy/tfoX 1835820..1836416 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  RJF2_RS08885 (RJF2_08885) yccS 1836430..1838565 (-) 2136 WP_002898422.1 YccS family putative transporter -
  RJF2_RS08890 (RJF2_08890) - 1838583..1839029 (-) 447 WP_004224032.1 YccF domain-containing protein -
  RJF2_RS08895 (RJF2_08895) helD 1839154..1841208 (+) 2055 WP_009485779.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=167122 RJF2_RS08880 WP_004179217.1 1835820..1836416(+) (sxy/tfoX) [Klebsiella pneumoniae subsp. pneumoniae strain RJF293]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=167122 RJF2_RS08880 WP_004179217.1 1835820..1836416(+) (sxy/tfoX) [Klebsiella pneumoniae subsp. pneumoniae strain RJF293]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment