Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   FORC46_RS03110 Genome accession   NZ_CP017229
Coordinates   591714..592097 (+) Length   127 a.a.
NCBI ID   WP_002856861.1    Uniprot ID   -
Organism   Campylobacter jejuni strain FORC_046 isolate Not reported     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 586714..597097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC46_RS03090 (FORC46_0604) - 586793..588727 (-) 1935 WP_002856931.1 RNB domain-containing ribonuclease -
  FORC46_RS03095 (FORC46_0605) ilvC 588846..589868 (+) 1023 WP_002857064.1 ketol-acid reductoisomerase -
  FORC46_RS03100 (FORC46_0606) - 589872..590954 (+) 1083 WP_002856938.1 divergent polysaccharide deacetylase family protein -
  FORC46_RS03105 (FORC46_0607) dprA 590944..591717 (+) 774 WP_002857196.1 DNA-processing protein DprA Machinery gene
  FORC46_RS03110 (FORC46_0608) dprB 591714..592097 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX Machinery gene
  FORC46_RS03115 (FORC46_0609) - 592126..592965 (+) 840 WP_011812724.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  FORC46_RS03120 (FORC46_0610) msrA 593141..593638 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  FORC46_RS03125 (FORC46_0611) ppa 593679..594197 (-) 519 WP_002855031.1 inorganic diphosphatase -
  FORC46_RS03130 (FORC46_0612) adk 594207..594785 (-) 579 WP_002855137.1 adenylate kinase -
  FORC46_RS03135 (FORC46_0613) aspS 594782..596533 (-) 1752 WP_002854803.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14074.57 Da        Isoelectric Point: 9.5433

>NTDB_id=167114 FORC46_RS03110 WP_002856861.1 591714..592097(+) (dprB) [Campylobacter jejuni strain FORC_046 isolate Not reported]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=167114 FORC46_RS03110 WP_002856861.1 591714..592097(+) (dprB) [Campylobacter jejuni strain FORC_046 isolate Not reported]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCTGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTATCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449