Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   AWQ23_RS09550 Genome accession   NZ_CP013998
Coordinates   1982168..1983730 (+) Length   520 a.a.
NCBI ID   WP_062434814.1    Uniprot ID   -
Organism   Picosynechococcus sp. PCC 73109     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1977168..1988730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWQ23_RS09525 (AWQ23_09525) rpmF 1977885..1978052 (-) 168 WP_012307503.1 50S ribosomal protein L32 -
  AWQ23_RS09530 (AWQ23_09530) - 1978265..1979365 (+) 1101 WP_030006411.1 DUF389 domain-containing protein -
  AWQ23_RS09535 (AWQ23_09535) pstB 1979710..1980513 (+) 804 WP_012307505.1 phosphate ABC transporter ATP-binding protein PstB -
  AWQ23_RS09540 (AWQ23_09540) - 1980807..1981283 (+) 477 WP_012307506.1 FHA domain-containing protein -
  AWQ23_RS09545 (AWQ23_09545) - 1981340..1982134 (+) 795 WP_012307507.1 TIGR03943 family putative permease subunit -
  AWQ23_RS09550 (AWQ23_09550) comA 1982168..1983730 (+) 1563 WP_062434814.1 phospholipase D-like domain-containing protein Machinery gene
  AWQ23_RS09555 (AWQ23_09555) - 1983786..1984574 (+) 789 WP_062434815.1 tetratricopeptide repeat protein -
  AWQ23_RS09560 (AWQ23_09560) recQ 1984586..1986724 (-) 2139 WP_062434816.1 DNA helicase RecQ -
  AWQ23_RS09565 (AWQ23_09565) - 1986747..1987382 (-) 636 WP_062434818.1 exopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 520 a.a.        Molecular weight: 56974.07 Da        Isoelectric Point: 4.5821

>NTDB_id=167068 AWQ23_RS09550 WP_062434814.1 1982168..1983730(+) (comA) [Picosynechococcus sp. PCC 73109]
MVNPAARRPFFVLWGLLVVGLLGCQGGRGRSPQDESIQVYFNQRQGRRISYTEPYRQLKRPGDNLEEILIEGINSAQNTI
DIAIQELNLPLVAEALADQAAAGITIRVIVENNYRQPWAEPDSTEILELDERDQGKYQEFVALADENQDGFLDAAETAKY
DAIAILERAKIPILDDTADGSKGSGLMHHKFMVVDGETVITGSANWTLSGIHGDFANPETRGNVNHLMRIQDPAIAQVFT
TEFEEMWTGRKFGVQKLQEPPQTFSVGNSRVTVQFSPFSSSQPWENTSNGLIGSTLAQAQESISLALFVFSEQKIANILE
KEAQEGTAIRALIDPSFAFREYSDGLDLLGVNLKEKCDPFNRPWANPIQTVGTPKLPKGDKFHHKFAVIDGKTVITGSHN
WSAAANNQNDETLLIIQNEAIAQQFQAEFDQFYTTAYLGIPPFIASKQKPMPADCTVAATNGPVNLNTASAVELETLPGI
GPSLAQGIIEGRPYSGLTDLQRVSGIGEKKAADLAGKVTW

Nucleotide


Download         Length: 1563 bp        

>NTDB_id=167068 AWQ23_RS09550 WP_062434814.1 1982168..1983730(+) (comA) [Picosynechococcus sp. PCC 73109]
ATGGTTAATCCCGCCGCTCGCCGCCCATTTTTCGTTCTTTGGGGTCTGTTGGTCGTTGGTCTGCTGGGTTGCCAGGGGGG
AAGAGGGCGATCGCCCCAGGATGAATCCATTCAAGTGTATTTCAATCAGCGTCAAGGCCGACGTATTAGTTACACCGAAC
CCTACCGCCAACTGAAACGCCCAGGGGATAACCTCGAAGAAATTTTGATTGAGGGCATTAACAGCGCCCAAAACACCATC
GATATTGCGATTCAGGAGTTGAACTTGCCCCTGGTAGCTGAAGCTCTGGCCGACCAAGCCGCTGCGGGAATCACAATTCG
CGTCATCGTCGAAAATAATTACCGTCAACCCTGGGCCGAACCTGATTCGACAGAAATTTTAGAACTCGATGAACGGGATC
AGGGAAAATACCAAGAATTTGTCGCCCTCGCCGACGAAAACCAAGATGGCTTTTTGGATGCGGCAGAGACGGCTAAATAT
GATGCGATCGCCATTCTAGAACGGGCAAAGATTCCGATTTTGGACGACACCGCCGACGGTTCCAAAGGGAGCGGCCTGAT
GCACCACAAATTTATGGTGGTCGATGGGGAAACGGTGATCACCGGCTCAGCAAACTGGACATTAAGCGGCATCCACGGAG
ATTTCGCCAACCCGGAAACCAGGGGTAATGTGAACCACCTAATGCGGATCCAAGATCCGGCGATCGCCCAGGTTTTTACA
ACAGAATTTGAGGAGATGTGGACAGGGCGTAAGTTTGGAGTCCAGAAACTTCAGGAACCGCCCCAAACCTTTAGCGTAGG
CAACAGTCGCGTCACCGTTCAGTTTTCGCCTTTCTCTAGTTCCCAACCTTGGGAAAATACGAGCAATGGTCTCATTGGCA
GCACCCTCGCCCAAGCCCAGGAGTCAATTAGCCTGGCCCTATTTGTGTTCTCTGAGCAAAAAATCGCCAATATTTTAGAA
AAAGAAGCTCAAGAAGGCACTGCAATCCGCGCCTTAATTGATCCGAGTTTTGCCTTTCGGGAATATAGCGATGGACTGGA
TCTGTTGGGGGTGAATCTCAAGGAAAAATGTGACCCCTTTAATCGGCCCTGGGCTAACCCCATTCAAACCGTCGGCACGC
CCAAATTACCCAAGGGGGACAAATTTCACCACAAATTCGCTGTCATCGATGGCAAAACCGTAATTACTGGTTCCCACAAT
TGGTCAGCTGCTGCCAATAATCAAAACGACGAGACCCTCTTAATTATCCAGAACGAGGCGATCGCCCAACAATTTCAAGC
TGAATTCGATCAGTTTTATACCACGGCCTACCTGGGGATTCCGCCCTTTATCGCCAGCAAACAAAAACCGATGCCCGCTG
ACTGTACCGTAGCCGCCACCAATGGCCCCGTGAACCTCAATACCGCCAGTGCCGTCGAACTCGAAACCCTACCTGGCATT
GGCCCCAGCCTCGCCCAAGGGATTATCGAAGGCCGTCCCTACTCTGGTTTGACGGATCTGCAACGGGTGTCGGGCATTGG
GGAAAAGAAAGCCGCCGACCTGGCCGGAAAAGTCACTTGGTAG

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(69-247)

PLD-like domain (PLDc_2)

(295-431)

Helix-hairpin-helix motif (HHH_3)

(462-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

49.511

98.269

0.487

Multiple sequence alignment