Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   BHT24_RS17780 Genome accession   NZ_CP017220
Coordinates   3419880..3421127 (+) Length   415 a.a.
NCBI ID   WP_016236885.1    Uniprot ID   A0AB35XDI6
Organism   Escherichia coli strain FAM21845     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3414880..3426127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHT24_RS17760 (BHT24_17035) rfbD 3415225..3416112 (+) 888 WP_016240569.1 dTDP-4-dehydrorhamnose reductase -
  BHT24_RS17765 (BHT24_17040) rfbA 3416264..3417136 (+) 873 WP_016240568.1 glucose-1-phosphate thymidylyltransferase RfbA -
  BHT24_RS17770 (BHT24_17045) rfbC 3417189..3417737 (+) 549 WP_016236887.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  BHT24_RS17775 (BHT24_17050) - 3417788..3419791 (+) 2004 WP_057107657.1 capsular polysaccharide biosynthesis protein -
  BHT24_RS17780 (BHT24_17055) kpsS 3419880..3421127 (+) 1248 WP_016236885.1 capsule biosynthesis protein Regulator
  BHT24_RS17785 (BHT24_17060) - 3421284..3421960 (+) 677 WP_223602151.1 IS1 family transposase -
  BHT24_RS17790 - 3421943..3422414 (-) 472 Protein_3286 IS30-like element IS30 family transposase -
  BHT24_RS17795 (BHT24_17065) - 3422482..3422739 (-) 258 Protein_3287 transposase -
  BHT24_RS17800 - 3422814..3423029 (+) 216 Protein_3288 darB domain protein -
  BHT24_RS17805 (BHT24_17070) - 3423063..3423503 (+) 441 WP_000258162.1 hypothetical protein -
  BHT24_RS17810 (BHT24_17075) - 3423500..3423748 (+) 249 WP_000747846.1 hypothetical protein -
  BHT24_RS17815 (BHT24_17080) - 3423787..3424380 (-) 594 WP_236922151.1 helix-turn-helix domain-containing protein -
  BHT24_RS17820 (BHT24_17085) - 3424415..3425395 (+) 981 WP_000019403.1 IS5-like element IS5 family transposase -
  BHT24_RS17825 (BHT24_17090) - 3425535..3426050 (-) 516 Protein_3293 fimbria/pilus periplasmic chaperone -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 48937.16 Da        Isoelectric Point: 9.6529

>NTDB_id=167067 BHT24_RS17780 WP_016236885.1 3419880..3421127(+) (kpsS) [Escherichia coli strain FAM21845]
MEEQAIRHLLNGRRYLLLQGPMGPCFARLATWLQHSHREVKQVCFNAGDAWYAAKETSLHYTGPVKNFAFWLRDLHKEYA
FDTIVCFGDCRPMHVEAKKWARGKAIDFLAFEEGYFRPFYITLEKGGVNAFSSMPIDAKYYREQPLPELKTPTPWKPSAF
NRAAHAMLYYAAGWFGRHRYRGYRHHKSFSPWYEMRCWVRAGRRKLWYRWKQRHMLSHITETLDNAYYLAILQVYNDSQI
IHHSPYKDVRDYIETVIRSFARHAPKEHHLVFKHHPMDRGHRYYGVLINTLCEKYGITTDRVIYIHDLSLPALLTHTRGV
ITVNSTAGLSALIHNKPLKVMGKALYDIEGLTWQGPLNQFWQTDFAPDKQLFHRFRTHLLYNTQINAVFYGKSDWLNVPT
ELPLPDSIIDSELER

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=167067 BHT24_RS17780 WP_016236885.1 3419880..3421127(+) (kpsS) [Escherichia coli strain FAM21845]
ATGGAAGAGCAAGCCATACGCCATTTATTAAATGGCCGCCGATATCTTTTATTACAAGGACCGATGGGCCCCTGCTTTGC
ACGTCTGGCGACCTGGCTGCAGCACAGCCACCGCGAAGTGAAGCAGGTCTGCTTTAATGCCGGAGACGCCTGGTATGCCG
CAAAAGAGACGTCGCTGCACTACACCGGCCCGGTGAAAAATTTTGCCTTCTGGCTGCGCGATCTGCACAAAGAGTACGCC
TTCGACACCATCGTCTGTTTCGGGGATTGCCGCCCGATGCATGTCGAAGCGAAGAAGTGGGCGCGCGGTAAAGCCATCGA
CTTTCTCGCCTTTGAGGAGGGGTATTTCCGGCCATTTTATATCACCTTGGAAAAAGGCGGCGTGAACGCCTTCTCCTCGA
TGCCCATCGATGCGAAATACTATCGCGAGCAGCCGCTGCCGGAGCTGAAAACCCCGACGCCATGGAAGCCCAGCGCCTTT
AACCGTGCCGCCCACGCCATGCTCTACTACGCGGCAGGCTGGTTTGGTCGCCATCGCTATCGCGGCTACCGCCACCACAA
GTCATTCTCCCCGTGGTATGAGATGCGCTGCTGGGTCCGTGCCGGCCGTCGTAAGCTGTGGTATCGCTGGAAGCAGCGCC
ACATGTTGAGCCATATCACCGAAACGCTGGACAACGCGTACTACCTGGCGATTTTGCAGGTCTACAACGACAGCCAGATT
ATTCACCACAGCCCGTATAAAGATGTGCGTGACTATATCGAAACCGTGATCCGCTCCTTTGCCCGCCATGCGCCGAAAGA
ACACCATCTGGTGTTCAAGCATCACCCGATGGATCGTGGTCACCGCTATTATGGTGTGCTGATTAATACGCTGTGCGAGA
AGTACGGCATTACGACAGACCGGGTGATCTATATCCACGATCTCTCCCTGCCCGCCCTGCTGACCCATACCCGGGGGGTG
ATCACCGTTAACAGCACTGCGGGGCTGTCGGCGCTGATCCACAACAAGCCGCTCAAGGTGATGGGCAAAGCGCTGTATGA
CATCGAAGGCTTAACCTGGCAGGGGCCGTTGAACCAGTTCTGGCAAACGGATTTCGCGCCTGACAAACAGCTGTTCCACC
GTTTTCGTACCCACCTGCTCTACAACACGCAGATCAACGCCGTGTTTTACGGTAAGTCCGACTGGCTTAACGTCCCGACA
GAACTCCCCCTGCCGGATTCTATTATCGATTCCGAACTCGAACGCTAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AB35XDI6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.66

93.494

0.361