Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AWQ23_RS07050 Genome accession   NZ_CP013998
Coordinates   1464681..1465076 (-) Length   131 a.a.
NCBI ID   WP_012306993.1    Uniprot ID   A0AAE8LM63
Organism   Picosynechococcus sp. PCC 73109     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1459681..1470076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWQ23_RS07035 (AWQ23_07035) - 1460333..1461127 (-) 795 WP_012306990.1 MlaE family lipid ABC transporter permease subunit -
  AWQ23_RS16325 (AWQ23_07040) - 1461234..1463942 (-) 2709 WP_062433820.1 methyl-accepting chemotaxis protein -
  AWQ23_RS07045 (AWQ23_07045) - 1464083..1464619 (-) 537 WP_030006571.1 chemotaxis protein CheW -
  AWQ23_RS07050 (AWQ23_07050) pilH 1464681..1465076 (-) 396 WP_012306993.1 response regulator transcription factor Machinery gene
  AWQ23_RS07055 (AWQ23_07055) - 1465335..1466522 (-) 1188 WP_062433823.1 response regulator -
  AWQ23_RS07060 (AWQ23_07060) hmpF 1466953..1468680 (+) 1728 WP_062433826.1 pilus motility taxis protein HmpF -
  AWQ23_RS07065 (AWQ23_07065) - 1468693..1469667 (-) 975 WP_062433829.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14598.04 Da        Isoelectric Point: 6.3538

>NTDB_id=167061 AWQ23_RS07050 WP_012306993.1 1464681..1465076(-) (pilH) [Picosynechococcus sp. PCC 73109]
MSRILVVEDSLSQREMISELLKGNGLTVDVAGDGLEALETLSQMAKNAAETLPNLIVLDIVMPRMNGYELCRRLKSDPKI
QNIPIVMCSSKGEEFDRYWGMKQGADAYIAKPFQPAELIGTIKQLLRSNKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=167061 AWQ23_RS07050 WP_012306993.1 1464681..1465076(-) (pilH) [Picosynechococcus sp. PCC 73109]
ATGAGTAGAATTTTGGTTGTTGAGGATAGCCTCTCTCAACGGGAAATGATTTCAGAATTACTGAAAGGCAACGGCTTGAC
AGTGGATGTTGCCGGTGATGGTCTTGAGGCGTTAGAAACCCTCAGTCAAATGGCTAAAAATGCGGCTGAAACCCTGCCCA
ACTTAATTGTGCTCGACATTGTTATGCCACGGATGAACGGTTACGAACTCTGTCGTCGCCTCAAATCCGACCCAAAAATT
CAAAATATCCCCATTGTGATGTGCTCTTCAAAGGGGGAAGAATTTGACCGGTACTGGGGCATGAAGCAGGGAGCCGATGC
TTATATCGCGAAACCCTTTCAGCCAGCGGAGTTAATTGGCACCATCAAGCAACTCCTACGCAGCAATAAAAAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

67.969

97.71

0.664

Multiple sequence alignment