Detailed information NTG0167060

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BHT24_RS15780
• Genome accession: NZ_CP017220
• Coordinates: 3020310..3021302 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FAM21845
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3015310..3026302

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BHT24_RS15760 (BHT24_15105)	otnK	3016085..3017347 (+)	1263	WP_000590392.1	3-oxo-tetronate kinase	-
BHT24_RS15765 (BHT24_15110)	ygbL	3017344..3017982 (+)	639	WP_001278994.1	aldolase	-
BHT24_RS15770 (BHT24_15115)	ygbM	3017987..3018763 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
BHT24_RS15775 (BHT24_15120)	ygbN	3018852..3020216 (+)	1365	WP_000104441.1	GntP family transporter	-
BHT24_RS15780 (BHT24_15125)	rpoS	3020310..3021302 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
BHT24_RS15785 (BHT24_15130)	nlpD	3021365..3022459 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
BHT24_RS15790 (BHT24_15135)	pcm	3022644..3023270 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BHT24_RS15795 (BHT24_15140)	surE	3023264..3024025 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BHT24_RS15800 (BHT24_15145)	truD	3024006..3025055 (-)	1050	WP_044863711.1	tRNA pseudouridine(13) synthase TruD	-
BHT24_RS15805 (BHT24_15150)	ispF	3025052..3025531 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BHT24_RS15810 (BHT24_15155)	ispD	3025531..3026241 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=167060 BHT24_RS15780 WP_000081550.1 3020310..3021302(-) (rpoS) [Escherichia coli strain FAM21845]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=167060 BHT24_RS15780 WP_000081550.1 3020310..3021302(-) (rpoS) [Escherichia coli strain FAM21845]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715