Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BHT24_RS12105 Genome accession   NZ_CP017220
Coordinates   2275515..2276942 (+) Length   475 a.a.
NCBI ID   WP_000980610.1    Uniprot ID   -
Organism   Escherichia coli strain FAM21845     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2270515..2281942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHT24_RS27830 (BHT24_11550) - 2271325..2271690 (+) 366 WP_001280456.1 EutP/PduV family microcompartment system protein -
  BHT24_RS12085 (BHT24_11555) tmaR 2271791..2272120 (-) 330 WP_000450409.1 DUF496 family protein -
  BHT24_RS12090 (BHT24_11560) yeeA 2272292..2273350 (-) 1059 WP_001200891.1 FUSC family protein -
  BHT24_RS12095 (BHT24_11565) sbmC 2273548..2274021 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  BHT24_RS12100 (BHT24_11570) dacD 2274140..2275306 (-) 1167 WP_057107501.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  BHT24_RS12105 (BHT24_11575) sbcB 2275515..2276942 (+) 1428 WP_000980610.1 exodeoxyribonuclease I Machinery gene
  BHT24_RS12110 (BHT24_11580) tsuB 2276985..2277212 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  BHT24_RS12115 (BHT24_11585) tsuA 2277226..2278284 (-) 1059 WP_000492320.1 thiosulfate utilization transporter TsuA/YeeE -
  BHT24_RS12120 (BHT24_11590) plaP 2278463..2279821 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  BHT24_RS27465 yoeI 2279811..2279873 (-) 63 WP_010723108.1 membrane protein YoeI -
  BHT24_RS12125 (BHT24_11595) yeeY 2280088..2281017 (-) 930 WP_081178150.1 LysR substrate-binding domain-containing protein -
  BHT24_RS12130 (BHT24_11600) yeeZ 2281063..2281887 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54472.76 Da        Isoelectric Point: 5.4720

>NTDB_id=167047 BHT24_RS12105 WP_000980610.1 2275515..2276942(+) (sbcB) [Escherichia coli strain FAM21845]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=167047 BHT24_RS12105 WP_000980610.1 2275515..2276942(+) (sbcB) [Escherichia coli strain FAM21845]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTAATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGTAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATAAATAAATGCCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTACGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment