Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | BHT24_RS12035 | Genome accession | NZ_CP017220 |
| Coordinates | 2265824..2266300 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186775.1 | Uniprot ID | A7ZVJ5 |
| Organism | Escherichia coli strain FAM21845 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2260824..2271300
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BHT24_RS12005 (BHT24_11475) | - | 2260945..2263791 (+) | 2847 | WP_057107499.1 | Ag43/Cah family autotransporter adhesin | - |
| BHT24_RS12010 (BHT24_11480) | - | 2263862..2264057 (+) | 196 | Protein_2219 | DUF905 family protein | - |
| BHT24_RS12020 (BHT24_11485) | - | 2264175..2264993 (+) | 819 | WP_001765427.1 | DUF932 domain-containing protein | - |
| BHT24_RS12030 (BHT24_11495) | - | 2265335..2265808 (+) | 474 | WP_001765426.1 | antirestriction protein | - |
| BHT24_RS12035 (BHT24_11500) | radC | 2265824..2266300 (+) | 477 | WP_001186775.1 | JAB domain-containing protein | Machinery gene |
| BHT24_RS12040 (BHT24_11505) | yeeT | 2266363..2266584 (+) | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| BHT24_RS12050 (BHT24_11515) | - | 2266747..2267115 (+) | 369 | WP_001295723.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| BHT24_RS12055 (BHT24_11520) | - | 2267205..2267579 (+) | 375 | WP_042966690.1 | TA system toxin CbtA family protein | - |
| BHT24_RS12060 (BHT24_11525) | - | 2267579..2267782 (+) | 204 | WP_001398797.1 | DUF5983 family protein | - |
| BHT24_RS28015 (BHT24_11530) | - | 2267816..2267908 (+) | 93 | Protein_2227 | DUF957 domain-containing protein | - |
| BHT24_RS28745 | - | 2268067..2269095 (+) | 1029 | Protein_2228 | IS110 family transposase | - |
| BHT24_RS12070 (BHT24_11540) | istA | 2269433..2270455 (+) | 1023 | WP_000255946.1 | IS21-like element IS100 family transposase | - |
| BHT24_RS12075 (BHT24_11545) | istB | 2270452..2271234 (+) | 783 | WP_001317493.1 | IS21-like element IS100kyp family helper ATPase IstB | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17687.30 Da Isoelectric Point: 7.1437
>NTDB_id=167046 BHT24_RS12035 WP_001186775.1 2265824..2266300(+) (radC) [Escherichia coli strain FAM21845]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=167046 BHT24_RS12035 WP_001186775.1 2265824..2266300(+) (radC) [Escherichia coli strain FAM21845]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
55.752 |
71.519 |
0.399 |