Detailed information NTG0167022

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: BHT24_RS01720
• Genome accession: NZ_CP017220
• Coordinates: 332756..335704 (-)
• Length: 982 a.a.
• NCBI ID: WP_081177954.1
• Uniprot ID: -
• Organism: Escherichia coli strain FAM21845
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 327756..340704

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BHT24_RS01695 (BHT24_01640)	yfdX2	328304..329191 (-)	888	WP_001005473.1	heat resistance protein YfdX2	-
BHT24_RS01700 (BHT24_01645)	yfdX1	329294..330208 (-)	915	WP_001022485.1	heat resistance protein YfdX1	-
BHT24_RS01705 (BHT24_01650)	hsp20-GI	330231..330689 (-)	459	WP_001275372.1	small heat shock protein sHSP20-GI	-
BHT24_RS01710 (BHT24_01655)	-	330777..332504 (-)	1728	WP_000412528.1	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	-
BHT24_RS01715 (BHT24_01660)	-	332565..332756 (-)	192	WP_001295707.1	hypothetical protein	-
BHT24_RS01720 (BHT24_01665)	clpC	332756..335704 (-)	2949	WP_081177954.1	heat shock survival AAA family ATPase ClpK	Regulator
BHT24_RS01725 (BHT24_01670)	hsp20	335810..336379 (-)	570	WP_057107661.1	small heat shock protein sHSP20	-
BHT24_RS01730 (BHT24_01675)	-	336414..336695 (-)	282	WP_000643630.1	helix-turn-helix domain-containing protein	-
BHT24_RS27785 (BHT24_01680)	-	336925..337188 (-)	264	WP_044864790.1	hypothetical protein	-
BHT24_RS27790 (BHT24_01685)	-	337203..337466 (+)	264	WP_001247776.1	transposase	-
BHT24_RS27215	-	337411..337575 (+)	165	Protein_328	transposase domain-containing protein	-
BHT24_RS01745 (BHT24_01690)	-	337793..338983 (+)	1191	WP_032149279.1	IS256 family transposase	-
BHT24_RS01750 (BHT24_01695)	-	338989..339478 (-)	490	Protein_330	IS3 family transposase	-
BHT24_RS01755 (BHT24_01700)	-	339559..340461 (-)	903	Protein_331	reverse transcriptase domain-containing protein	-

Sequence

Protein

• Length: 982 a.a.
• Molecular weight: 107839.79 Da
• Isoelectric Point: 5.4612

>NTDB_id=167022 BHT24_RS01720 WP_081177954.1 332756..335704(-) (clpC) [Escherichia coli strain FAM21845]
MARKQCQVCGQPATVRVEANLNGRHSTMLLCDDHYRQLVRQQKRTVSPLEALFGSRSGLFEDFLGSDFFRIGDDATPVAA
DTDDVVDASFGEPAAAGSGAPRRRGSGLASRISEQSEALLQEAAKHAAEFGRSEVDTEHLLLALADSDVVKTILGQFKIK
VDDLKRQIESEAKRGDKPFEGEIGVSPRVKDALSRAFVASNELGHSYVGPEHFLIGLAEEGEGLAANLLRRYGLTPQALR
QQVSKVVGKGAEDGRAETPTNTPELDKYSRDLTKMARDGKLDPVIGRAQEIETTIEVLARRKKNNPVLIGEPGVGKTAIV
EGLAQRMVAGEVPETLRDKRLVELNINAMVAGAKYRGEFEERVQKVLKEVTEHQGELILFIDEVHTIVGAGQGGGEGGLD
VANVFKPMMARGELNLIGATTLNEYQKYIEKDAALERRFQPVTVPEPTVAQTIMILRGLRDTFEAHHKVSISEDAIIAAA
ELSDRYITARFLPDKAIDLLDQAAARVKLSATARPVAVQELESELHQLRREQDYVAARKQYDQAAELGKRIEAKEAELKK
LVENWERERASGSAEVKAEHVAQIVSRLTGIPVNELTVEEREKLLHLEQRLHERLVGQDEAVRAVADAVRLSRAGLREGS
KPVATFLFLGPTGVGKTELAKALAESIYGDEHALLRIDMSEYGERHTVARLVGAPPGYVGYDEGGQLTEKVRRKPYSVLL
LDEIEKAHPDVYNILLQVFDDGRLTDGKGRVVDFTNTIIIATSNLGSDIIQRRLKARGAADEEYEKTKAEVMDVLRGHFR
PEFLNRIDEIIVFHALGKEEIRHIVGLQLDRVARSAASQGVTLTFDQTLIDHFAEEGYKPEFGARELKRLIRSELETALA
REMLGGGIGKGDHASARWDDKAERVVFERKEPLQTPAEPEQPDAAKATEPEQPDAAKATEPEQPDAAKATEPEQPDAAKA
TETPHGDAGKGSRKKKSASDAS

Nucleotide

• Length: 2949 bp

>NTDB_id=167022 BHT24_RS01720 WP_081177954.1 332756..335704(-) (clpC) [Escherichia coli strain FAM21845]
ATGGCCAGAAAACAATGCCAGGTCTGCGGCCAACCCGCCACCGTGCGGGTGGAAGCCAATCTCAACGGTCGTCACAGCAC
CATGCTGTTGTGCGACGACCATTACCGGCAATTAGTGCGCCAGCAAAAGCGCACCGTTTCGCCGCTGGAAGCCTTGTTCG
GTTCGCGCAGCGGCCTGTTCGAGGACTTCCTCGGCAGTGACTTCTTCCGCATCGGCGACGACGCGACGCCAGTTGCCGCC
GATACCGATGACGTGGTCGATGCCTCGTTTGGCGAGCCCGCCGCCGCAGGTTCGGGTGCGCCGCGCCGTCGCGGCAGTGG
GCTGGCCAGCCGCATCAGCGAACAGTCGGAAGCCTTGTTGCAGGAGGCCGCCAAACACGCTGCCGAATTTGGCCGCTCCG
AGGTGGATACCGAACATCTGCTGCTGGCGCTGGCCGACAGCGACGTGGTCAAGACCATCCTGGGTCAGTTCAAGATCAAG
GTCGATGACCTCAAGCGGCAGATCGAGTCTGAGGCCAAGCGCGGGGACAAGCCCTTCGAGGGCGAGATCGGCGTGTCGCC
GCGCGTGAAGGATGCGCTCAGCCGCGCCTTCGTGGCCTCCAATGAACTCGGCCATTCTTATGTCGGTCCAGAGCATTTCC
TGATTGGTCTGGCCGAGGAAGGCGAAGGGCTGGCCGCCAACCTGCTGCGCCGCTACGGCCTGACGCCGCAGGCGCTGCGC
CAACAGGTCAGCAAGGTGGTCGGCAAGGGCGCCGAGGATGGACGCGCTGAGACGCCGACCAACACGCCAGAACTCGACAA
GTACTCGCGCGACCTGACCAAGATGGCGCGCGACGGCAAGCTCGACCCGGTGATCGGCCGCGCGCAGGAGATCGAAACCA
CCATCGAGGTGCTGGCCCGGCGCAAGAAGAACAACCCGGTGCTGATCGGCGAGCCGGGTGTGGGCAAGACCGCCATCGTC
GAAGGGCTGGCGCAGCGCATGGTGGCGGGTGAAGTGCCCGAGACCTTGCGCGACAAGCGCCTGGTGGAACTCAACATCAA
CGCCATGGTGGCCGGCGCCAAATATCGCGGCGAGTTCGAGGAGCGCGTGCAGAAGGTGCTGAAGGAGGTGACCGAGCACC
AGGGCGAGCTGATTTTGTTCATCGACGAGGTGCACACCATCGTCGGTGCCGGCCAGGGCGGTGGCGAAGGCGGGCTGGAC
GTGGCCAACGTATTCAAACCGATGATGGCGCGCGGTGAACTCAACCTGATCGGCGCCACGACGCTGAACGAGTACCAGAA
ATACATCGAGAAGGATGCCGCACTGGAGCGGCGCTTCCAGCCGGTGACGGTGCCCGAGCCGACGGTGGCCCAGACCATCA
TGATTCTGCGCGGCCTGCGCGACACCTTCGAGGCGCACCACAAGGTCAGCATCTCCGAGGACGCGATCATCGCGGCGGCC
GAGTTGTCCGACCGCTACATCACGGCGCGCTTCCTGCCGGACAAGGCGATCGACCTGCTCGACCAGGCGGCCGCGCGCGT
GAAGCTGTCGGCCACGGCCCGGCCGGTGGCCGTGCAGGAGCTGGAGTCCGAACTGCACCAGCTGCGGCGTGAACAGGATT
ACGTGGCCGCGCGCAAGCAGTACGACCAGGCCGCCGAGCTCGGCAAGCGCATCGAAGCCAAGGAGGCCGAGCTCAAGAAG
CTCGTCGAGAACTGGGAGCGGGAGCGGGCCTCCGGCAGTGCAGAGGTCAAGGCGGAACACGTGGCGCAGATCGTCTCGCG
CCTGACCGGCATCCCGGTCAACGAGTTGACGGTGGAAGAGCGCGAAAAGCTGCTGCACTTGGAACAACGGCTGCACGAGC
GCCTGGTGGGACAAGACGAGGCGGTCCGTGCCGTGGCCGATGCCGTGCGGCTGTCCCGCGCCGGCCTGCGCGAAGGCAGC
AAACCGGTGGCTACCTTCCTGTTTCTGGGCCCGACCGGGGTGGGCAAGACCGAGCTCGCCAAGGCATTGGCCGAATCGAT
CTACGGCGATGAGCACGCCCTGTTGCGCATCGACATGTCGGAATATGGCGAACGCCATACCGTGGCGCGGCTGGTGGGCG
CGCCTCCGGGCTATGTCGGTTACGACGAAGGCGGTCAGCTCACCGAGAAGGTGCGGCGCAAGCCCTACAGCGTGCTGCTG
CTCGACGAGATCGAGAAGGCACACCCTGACGTCTACAACATCCTGCTGCAAGTGTTCGACGACGGTCGCCTCACCGACGG
CAAGGGCCGGGTGGTGGATTTCACCAACACCATCATCATCGCCACGTCCAACCTGGGTTCGGACATCATCCAGCGACGGC
TGAAGGCGCGTGGGGCGGCCGACGAGGAGTACGAAAAGACCAAGGCCGAGGTCATGGACGTGCTGCGCGGCCACTTCCGG
CCCGAGTTCCTCAACCGCATCGACGAGATCATCGTCTTCCATGCGCTGGGTAAGGAGGAGATCCGCCACATCGTCGGCCT
GCAGCTCGATCGCGTGGCGCGCAGCGCCGCCAGCCAGGGCGTGACGCTCACTTTCGATCAGACGCTGATCGACCATTTCG
CGGAAGAAGGCTACAAACCCGAGTTCGGTGCGCGTGAACTCAAGCGCCTGATCCGCAGCGAGCTGGAAACTGCGCTGGCG
CGCGAGATGCTCGGTGGCGGCATCGGCAAGGGCGATCACGCCAGCGCACGCTGGGACGACAAGGCCGAACGCGTGGTGTT
CGAACGCAAAGAGCCACTGCAGACCCCGGCCGAGCCGGAGCAGCCGGATGCCGCGAAGGCGACCGAGCCGGAGCAGCCGG
ATGCCGCGAAGGCGACCGAGCCGGAGCAGCCGGATGCCGCGAAGGCGACCGAGCCGGAGCAGCCGGATGCCGCGAAGGCG
ACCGAGACGCCGCACGGCGACGCTGGCAAAGGCTCGCGCAAGAAGAAGTCGGCGAGCGACGCATCTTGA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (641-810)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (816-894)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (199-248)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (123-171)

• AAA lid domain (AAA_lid_9) (449-547)

• ATPase family associated with various cellular activities (AAA) (AAA) (307-428)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	50.378	80.855	0.407