Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   DU202_RS00995 Genome accession   NZ_CP017152
Coordinates   209220..210374 (-) Length   384 a.a.
NCBI ID   WP_000755275.1    Uniprot ID   -
Organism   Acinetobacter baumannii DU202     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 204220..215374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DU202_RS00975 (DU202_00197) - 205381..206031 (+) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -
  DU202_RS00980 (DU202_00198) - 206137..207057 (+) 921 WP_000084546.1 DMT family transporter -
  DU202_RS00985 (DU202_00199) - 207449..208018 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  DU202_RS00990 (DU202_00200) dprA 208069..209199 (-) 1131 WP_002018389.1 DNA-processing protein DprA Machinery gene
  DU202_RS00995 (DU202_00201) tsaP 209220..210374 (-) 1155 WP_000755275.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  DU202_RS01010 (DU202_00204) def 211686..212216 (+) 531 WP_001196539.1 peptide deformylase -
  DU202_RS01015 - 212253..212681 (+) 429 WP_000231981.1 DUF2946 family protein -
  DU202_RS01020 (DU202_00206) - 212754..214868 (+) 2115 WP_001120679.1 TonB-dependent copper receptor -
  DU202_RS01025 (DU202_00207) - 214922..215128 (+) 207 WP_000182542.1 hypothetical protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42357.31 Da        Isoelectric Point: 8.5935

>NTDB_id=166947 DU202_RS00995 WP_000755275.1 209220..210374(-) (tsaP) [Acinetobacter baumannii DU202]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTHLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAFVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=166947 DU202_RS00995 WP_000755275.1 209220..210374(-) (tsaP) [Acinetobacter baumannii DU202]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCCTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTAGGTATTATTCGCCGCTACACTGGGCAAACCACTCACT
TACAACCTCAAGTTCGCGTCGAAGCATTAAATAATAGTGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGCTACTACAGGTTGCTTCAGGTGTTGCGGTCTCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAACAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGCTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGATCGCGGTACAACTCAGGGCATTCAAGTAGGTCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTGATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTTTGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

99.479

100

0.995