Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   APT62_RS06905 Genome accession   NZ_CP013988
Coordinates   1515790..1517586 (-) Length   598 a.a.
NCBI ID   WP_059349064.1    Uniprot ID   -
Organism   Aerococcus urinaeequi strain USDA-ARS-USMARC-56713     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1510790..1522586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APT62_RS06880 (APT62_06880) - 1511356..1512237 (-) 882 WP_048726825.1 RluA family pseudouridine synthase -
  APT62_RS06885 (APT62_06885) - 1512321..1513160 (-) 840 WP_016897697.1 NAD kinase -
  APT62_RS06890 (APT62_06890) - 1513253..1513954 (-) 702 WP_016897698.1 GTP pyrophosphokinase -
  APT62_RS06895 (APT62_06895) - 1514163..1514753 (+) 591 WP_059349063.1 CYTH domain-containing protein -
  APT62_RS06900 (APT62_06900) - 1514973..1515668 (+) 696 WP_026465422.1 DsbA family protein -
  APT62_RS06905 (APT62_06905) pepF 1515790..1517586 (-) 1797 WP_059349064.1 oligoendopeptidase F Regulator
  APT62_RS06910 (APT62_06910) - 1517654..1518751 (-) 1098 WP_059349065.1 competence protein CoiA -
  APT62_RS06915 (APT62_06915) trpS 1519085..1520080 (-) 996 WP_059134712.1 tryptophan--tRNA ligase -
  APT62_RS06920 (APT62_06920) spxA 1520295..1520711 (+) 417 WP_016897704.1 transcriptional regulator SpxA -
  APT62_RS06925 (APT62_06925) - 1520841..1521542 (+) 702 WP_016897705.1 adaptor protein MecA -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 67792.49 Da        Isoelectric Point: 4.5308

>NTDB_id=166899 APT62_RS06905 WP_059349064.1 1515790..1517586(-) (pepF) [Aerococcus urinaeequi strain USDA-ARS-USMARC-56713]
MAKIFEVKPRNEVDSAFQWDLTSIFPDDRAFENALSGFPKKADAFQDYKGTLDQGADQVVTVLEALLAVSRELESLYVYA
HLKHDQDTGDNKYLTYNSQAGALLAQVSEKISWFEPEVLAVSEDVQKTLEDHSEYGHFFRELFAKKAHVLSPNEEALLAG
ASEIFGVSSTTFSLLNNADLKFGKVKDEEGNDVTLSHGSYGVLLESADRSVRENAFKQLYATYEGVKNTNASLMSGNIKG
HNYTAKIRHYDSARQKALDNNNIPESVYDTLVDTVRKNTNLLHEYVALRKDMLGLDDLQMWDMYTPLTGDAPVKFTYEEA
KEITFKALAPLGDQYLKDLAKAFDEKWIDVYENEGKRSGAYSSGAYDTNPYILLNWQDSLNDLYTLVHELGHSMHSYYTR
SNQPYVYGDYSIFVAEIASTTNENLLTSYLLDTIEDKDAQIYILNHYLDGVKGTIFRQTQFAEFEKFMHESDANGQPLTA
DFLSENYFELNKAYYGPSIGEDKTIALEWSRIPHFYMNYYVYQYATGFSAANTLAKRLVEGEEGAVDKYLTYLKSGSSDF
PINVMQKAGIDMTNATYIEETFAQFEQRLAELKGLLNK

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=166899 APT62_RS06905 WP_059349064.1 1515790..1517586(-) (pepF) [Aerococcus urinaeequi strain USDA-ARS-USMARC-56713]
ATGGCAAAAATTTTTGAAGTAAAACCTAGAAATGAAGTAGACAGTGCGTTTCAATGGGACTTAACTAGTATCTTCCCAGA
TGATCGAGCTTTTGAGAATGCCTTAAGTGGATTCCCAAAGAAAGCGGATGCTTTTCAAGACTATAAAGGCACTCTAGATC
AAGGTGCTGACCAAGTGGTAACCGTATTAGAGGCCTTATTAGCGGTGAGCCGTGAATTGGAATCCCTATACGTTTATGCA
CATTTAAAACATGACCAAGACACAGGAGACAACAAGTACCTAACTTACAACAGTCAAGCGGGTGCCTTACTTGCTCAAGT
TAGTGAAAAGATCTCTTGGTTTGAGCCAGAAGTATTAGCAGTATCTGAAGATGTACAAAAAACTTTGGAAGACCACTCTG
AATATGGTCACTTCTTCCGTGAGTTATTTGCGAAGAAAGCGCATGTCTTATCACCGAATGAAGAGGCTTTACTTGCTGGT
GCTAGCGAAATCTTTGGTGTCTCTTCAACAACTTTCTCACTTTTAAACAATGCTGACTTAAAATTCGGTAAAGTCAAAGA
TGAAGAGGGCAATGATGTTACCCTTTCTCACGGTTCATACGGTGTCCTACTAGAAAGTGCAGACCGTTCTGTTCGAGAAA
ATGCCTTTAAACAACTTTATGCAACTTATGAAGGGGTTAAAAATACCAACGCTTCATTGATGTCAGGTAATATTAAAGGA
CATAATTATACGGCTAAAATTCGTCACTACGATTCAGCACGTCAAAAAGCTTTAGACAACAACAATATTCCAGAAAGTGT
TTATGACACATTAGTCGATACAGTAAGAAAGAATACAAATCTATTACATGAATATGTTGCCTTAAGAAAAGACATGCTAG
GTCTTGATGACTTACAAATGTGGGATATGTATACACCATTAACAGGTGATGCACCGGTGAAATTTACTTACGAAGAAGCT
AAAGAGATTACATTTAAGGCTTTAGCGCCTTTAGGTGACCAATACTTGAAAGACTTGGCCAAAGCCTTTGACGAGAAATG
GATCGATGTTTATGAAAATGAAGGTAAGCGTTCAGGAGCATACTCATCAGGTGCATATGATACCAACCCATATATCTTAC
TAAACTGGCAAGATTCATTGAATGACTTGTATACATTAGTTCATGAGTTAGGTCACTCAATGCACTCTTATTACACTAGA
AGTAACCAACCATACGTATATGGGGACTACTCAATTTTCGTAGCAGAAATTGCCTCTACGACAAACGAAAACTTATTAAC
TTCATATTTACTAGATACAATTGAAGATAAGGATGCACAAATCTATATCTTGAACCACTATCTTGATGGGGTAAAAGGGA
CAATCTTCCGTCAAACACAGTTTGCTGAATTTGAAAAATTCATGCATGAATCAGATGCAAACGGACAACCTTTAACAGCA
GACTTCTTAAGTGAAAACTACTTCGAATTAAACAAGGCCTACTACGGTCCGTCAATCGGAGAGGATAAAACAATCGCTTT
AGAATGGTCTCGTATCCCTCACTTCTACATGAACTACTATGTTTACCAATATGCAACAGGATTCTCTGCAGCCAACACAT
TGGCTAAACGTTTAGTAGAAGGTGAAGAGGGTGCCGTTGACAAGTACTTAACTTACCTGAAATCAGGTTCATCTGATTTC
CCAATTAATGTTATGCAAAAAGCGGGTATCGATATGACCAATGCCACTTATATCGAAGAAACCTTTGCCCAATTCGAGCA
AAGATTAGCTGAATTAAAAGGCCTATTAAACAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(123-182)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.168

99.666

0.5

Multiple sequence alignment