Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | APT59_RS17775 | Genome accession | NZ_CP013987 |
| Coordinates | 3900945..3902162 (-) | Length | 405 a.a. |
| NCBI ID | WP_059316074.1 | Uniprot ID | - |
| Organism | Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3895945..3907162
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APT59_RS17755 (APT59_17755) | - | 3898618..3899115 (+) | 498 | WP_059316071.1 | hypothetical protein | - |
| APT59_RS17760 (APT59_17760) | yacG | 3899271..3899468 (-) | 198 | WP_007160931.1 | DNA gyrase inhibitor YacG | - |
| APT59_RS17765 (APT59_17765) | coaE | 3899465..3900076 (-) | 612 | WP_059316072.1 | dephospho-CoA kinase | - |
| APT59_RS17770 (APT59_17770) | pilD | 3900073..3900945 (-) | 873 | WP_059316073.1 | prepilin peptidase | Machinery gene |
| APT59_RS17775 (APT59_17775) | pilC | 3900945..3902162 (-) | 1218 | WP_059316074.1 | type II secretion system F family protein | Machinery gene |
| APT59_RS17780 (APT59_17780) | pilB | 3902373..3904067 (-) | 1695 | WP_059316075.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| APT59_RS22265 | - | 3904280..3904714 (+) | 435 | WP_082696383.1 | pilin | - |
| APT59_RS17785 (APT59_17785) | - | 3904850..3905848 (-) | 999 | WP_059316076.1 | SDR family oxidoreductase | - |
Sequence
Protein
Download Length: 405 a.a. Molecular weight: 44218.11 Da Isoelectric Point: 9.8183
>NTDB_id=166872 APT59_RS17775 WP_059316074.1 3900945..3902162(-) (pilC) [Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511]
MADKAIKMGSFTWEGTDRKGTRVKGEMTGLNPALIKAQLRKQGINPTRVRKKSVSLFGKGKKIKPMDIALFTRQLATMMS
AGVPLLQAFDIIGEGFDNPNMRKMVDDIKQDVAAGNSLANSLRKQPQYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKKKIKKAMTYPAAVIVVAVIVSAILLIKVVPQFQSVFEGFGAQLPAFTLMVIAISEVLQEWWLLVLGGLFVLAFVLR
HFYKKSEKFRDAVDRGLLKIPLVGSILYKSAIARYARTLATTFAAGVPLVDALDSVAGATGNVVFRNAVEKIKGDVSTGM
QLNFSMRTTGVFSSMAIQMTAIGEESGSLDEMLSKVATFYEDEVDNMVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVI
MADKAIKMGSFTWEGTDRKGTRVKGEMTGLNPALIKAQLRKQGINPTRVRKKSVSLFGKGKKIKPMDIALFTRQLATMMS
AGVPLLQAFDIIGEGFDNPNMRKMVDDIKQDVAAGNSLANSLRKQPQYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKKKIKKAMTYPAAVIVVAVIVSAILLIKVVPQFQSVFEGFGAQLPAFTLMVIAISEVLQEWWLLVLGGLFVLAFVLR
HFYKKSEKFRDAVDRGLLKIPLVGSILYKSAIARYARTLATTFAAGVPLVDALDSVAGATGNVVFRNAVEKIKGDVSTGM
QLNFSMRTTGVFSSMAIQMTAIGEESGSLDEMLSKVATFYEDEVDNMVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVI
Nucleotide
Download Length: 1218 bp
>NTDB_id=166872 APT59_RS17775 WP_059316074.1 3900945..3902162(-) (pilC) [Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511]
ATGGCCGATAAAGCTATCAAGATGGGCAGCTTCACCTGGGAGGGGACCGATCGCAAAGGGACCAGGGTGAAAGGCGAGAT
GACGGGCTTGAATCCCGCCTTGATCAAGGCGCAGTTGCGTAAGCAGGGCATCAATCCGACTCGGGTGCGCAAGAAGTCGG
TGTCGCTGTTCGGCAAGGGCAAGAAGATCAAGCCCATGGATATCGCGCTGTTCACTCGGCAGCTGGCGACCATGATGAGC
GCAGGTGTACCCCTGCTGCAGGCCTTCGACATCATCGGCGAGGGCTTCGACAATCCCAACATGCGCAAGATGGTCGACGA
CATCAAGCAGGATGTCGCCGCGGGTAATAGCCTGGCCAATTCTCTGCGCAAACAGCCGCAGTATTTCGACGATCTCTATT
GCAACTTGGTGGATGCCGGCGAGCAATCTGGTGCCTTGGAGACCCTGCTGGATCGGGTAGCCACCTACAAGGAAAAGACC
GAGGCGCTGAAAAAGAAGATCAAGAAGGCCATGACCTATCCGGCGGCAGTCATCGTGGTCGCGGTGATCGTGTCGGCCAT
TCTGTTGATCAAGGTAGTGCCTCAGTTCCAGTCGGTGTTCGAGGGCTTTGGCGCTCAATTGCCGGCCTTTACGCTTATGG
TCATTGCTATTTCCGAGGTCCTGCAGGAATGGTGGTTGCTGGTACTTGGCGGACTCTTCGTACTGGCTTTCGTCCTTCGC
CACTTCTACAAGAAATCGGAAAAATTCCGCGACGCGGTTGACCGTGGATTGCTCAAGATTCCGTTGGTCGGTTCCATTCT
CTACAAGTCGGCCATCGCCCGTTATGCCCGCACGTTGGCTACCACCTTCGCGGCCGGTGTGCCGCTGGTGGATGCTCTCG
ATTCGGTGGCTGGTGCGACCGGCAACGTGGTATTCCGCAATGCCGTGGAGAAGATCAAGGGCGATGTTTCCACCGGTATG
CAGCTCAACTTCTCCATGCGGACTACCGGGGTGTTCTCGTCCATGGCCATCCAGATGACGGCCATCGGTGAAGAGTCGGG
TTCCCTGGACGAGATGCTGTCCAAGGTCGCGACCTTCTATGAAGACGAGGTCGACAACATGGTCGATAACCTCACCACCC
TGATGGAGCCGATGATCATGGCGGTCCTCGGGGTTCTGGTGGGTGGTCTGATCATCGCCATGTACCTGCCCATCTTCCAG
CTCGGCTCGGTAATCTGA
ATGGCCGATAAAGCTATCAAGATGGGCAGCTTCACCTGGGAGGGGACCGATCGCAAAGGGACCAGGGTGAAAGGCGAGAT
GACGGGCTTGAATCCCGCCTTGATCAAGGCGCAGTTGCGTAAGCAGGGCATCAATCCGACTCGGGTGCGCAAGAAGTCGG
TGTCGCTGTTCGGCAAGGGCAAGAAGATCAAGCCCATGGATATCGCGCTGTTCACTCGGCAGCTGGCGACCATGATGAGC
GCAGGTGTACCCCTGCTGCAGGCCTTCGACATCATCGGCGAGGGCTTCGACAATCCCAACATGCGCAAGATGGTCGACGA
CATCAAGCAGGATGTCGCCGCGGGTAATAGCCTGGCCAATTCTCTGCGCAAACAGCCGCAGTATTTCGACGATCTCTATT
GCAACTTGGTGGATGCCGGCGAGCAATCTGGTGCCTTGGAGACCCTGCTGGATCGGGTAGCCACCTACAAGGAAAAGACC
GAGGCGCTGAAAAAGAAGATCAAGAAGGCCATGACCTATCCGGCGGCAGTCATCGTGGTCGCGGTGATCGTGTCGGCCAT
TCTGTTGATCAAGGTAGTGCCTCAGTTCCAGTCGGTGTTCGAGGGCTTTGGCGCTCAATTGCCGGCCTTTACGCTTATGG
TCATTGCTATTTCCGAGGTCCTGCAGGAATGGTGGTTGCTGGTACTTGGCGGACTCTTCGTACTGGCTTTCGTCCTTCGC
CACTTCTACAAGAAATCGGAAAAATTCCGCGACGCGGTTGACCGTGGATTGCTCAAGATTCCGTTGGTCGGTTCCATTCT
CTACAAGTCGGCCATCGCCCGTTATGCCCGCACGTTGGCTACCACCTTCGCGGCCGGTGTGCCGCTGGTGGATGCTCTCG
ATTCGGTGGCTGGTGCGACCGGCAACGTGGTATTCCGCAATGCCGTGGAGAAGATCAAGGGCGATGTTTCCACCGGTATG
CAGCTCAACTTCTCCATGCGGACTACCGGGGTGTTCTCGTCCATGGCCATCCAGATGACGGCCATCGGTGAAGAGTCGGG
TTCCCTGGACGAGATGCTGTCCAAGGTCGCGACCTTCTATGAAGACGAGGTCGACAACATGGTCGATAACCTCACCACCC
TGATGGAGCCGATGATCATGGCGGTCCTCGGGGTTCTGGTGGGTGGTCTGATCATCGCCATGTACCTGCCCATCTTCCAG
CTCGGCTCGGTAATCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
79.012 |
100 |
0.79 |
| pilC | Acinetobacter baylyi ADP1 |
59.069 |
100 |
0.595 |
| pilC | Acinetobacter baumannii D1279779 |
58.911 |
99.753 |
0.588 |
| pilC | Legionella pneumophila strain ERS1305867 |
53.904 |
98.025 |
0.528 |
| pilG | Neisseria meningitidis 44/76-A |
44.828 |
100 |
0.449 |
| pilG | Neisseria gonorrhoeae MS11 |
44.581 |
100 |
0.447 |
| pilC | Vibrio cholerae strain A1552 |
41.728 |
100 |
0.417 |
| pilC | Vibrio campbellii strain DS40M4 |
39.951 |
100 |
0.402 |
| pilC | Thermus thermophilus HB27 |
37.965 |
99.506 |
0.378 |