Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   BFP66_RS05645 Genome accession   NZ_CP017142
Coordinates   1129752..1133018 (-) Length   1088 a.a.
NCBI ID   WP_063725275.1    Uniprot ID   -
Organism   Streptococcus suis strain GZ0565     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1124752..1138018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFP66_RS05635 (BFP66_05635) plsY 1125444..1126088 (+) 645 WP_015646902.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  BFP66_RS05640 (BFP66_05640) rexA 1126099..1129752 (-) 3654 WP_024395151.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  BFP66_RS05645 (BFP66_05645) rexB 1129752..1133018 (-) 3267 WP_063725275.1 ATP-dependent nuclease subunit B Machinery gene
  BFP66_RS05650 (BFP66_05650) - 1133126..1133284 (-) 159 WP_015646905.1 hypothetical protein -
  BFP66_RS05655 (BFP66_05655) obgE 1133659..1134972 (-) 1314 WP_032536533.1 GTPase ObgE -
  BFP66_RS05660 (BFP66_05660) - 1135176..1135304 (-) 129 WP_002943675.1 DUF4044 domain-containing protein -
  BFP66_RS10675 - 1135476..1135811 (-) 336 WP_079270670.1 hypothetical protein -
  BFP66_RS05665 (BFP66_05665) uvrC 1135880..1137649 (-) 1770 WP_024395154.1 excinuclease ABC subunit UvrC Machinery gene

Sequence

Protein


Download         Length: 1088 a.a.        Molecular weight: 124469.65 Da        Isoelectric Point: 5.1272

>NTDB_id=166809 BFP66_RS05645 WP_063725275.1 1129752..1133018(-) (rexB) [Streptococcus suis strain GZ0565]
MKLFYTDIRNPLTQHLTDTSAEFAKEAKRVFYIAPNSLSFEMERKVLEYLPEQATFDIIVTRFGQLARYLMIDRKEAGQP
LDDVGLAMIFFRVLSQFEDGDLKVYGRLQTDFGFINQLVALYKELQRANMSILDLEAIDSPDKQADLVKIFLAVTEILSK
EGFEHQSKLAQLTSLVETGQLDEQLKNIVLVVDGFSRFSAEEEALVSALNERVSEILIGVYASKKAVQATYAEGNVYQAN
VDFLRQLSAQFQTKATYIGQEPVLDSIGKFSKNMEAYYDYSGTMIDLTPADQEKIQLWEVVNQKEEVEQVATAIRQHVHQ
GARYKDILLLLGDVDSYKLQIGKIFDKYDIPYYFGKAEEMGHHPLVHFVESLERLRRYRFRAEDLLNLLKSGLYASISQK
DLDLFESYILFADMKGQAAFSRTFSVNGRADYDAEVIKEKRLVYDLNVLEPLRAKIMEPLNQLFKAGPQSGAALLEKFMA
FLEAIDLPKNMEKMSRNLSEVEQEKEEQVWKSFTHILENFHQIFGKEKLKMDDFLAILQAGMQASHYRTVPATVDVVNVK
SYDLIEPHTAKYVYAIGMGQSNFPKVAKNTSLLTEEEMEKVNLVSSSSSRFDLVSRENIKKNHAAMMSLLNAATEQLVIS
TPQIYNEGEDSLSPYIKILQKMGLKSEERGRIKTLSPQDIGHYKSLLSRLIESERPSLETEEWEGQRAFWTVLVRHLKKK
LESQSIEIPTITGDIASKQLSDETLAALYPEDKPLNLSASSLTNFYNNQYLYFVRNVLRLREQESIHPTAFQHGLFLHRI
FERVVMDQSELDFDQKVDKAILRTRDEAEFAMFYNQDADARYTEEVLDKIARSSATILRDNDLVEIDGQEKSFRQDKALV
FDLQNGKSVHVNGTIDRLDTLQINQAVGVVDYKSSDQSFSVGDFYNGLKPQLVTYLAALQELDETKDKPVFGAMYLHLQD
PIIKLKDTKNLEQLEGAANTSLVYKGLFLKEESLGLNHFYQTRNQLYTEDEFAVLLNHNQELYKQAAMDILAGRFAINPY
TKDGRSVAGEQLKAITGFEADRHMGMARRLVKEAKRQDWMERMKGGQD

Nucleotide


Download         Length: 3267 bp        

>NTDB_id=166809 BFP66_RS05645 WP_063725275.1 1129752..1133018(-) (rexB) [Streptococcus suis strain GZ0565]
ATGAAATTATTCTATACAGATATTCGCAATCCTCTGACACAGCATTTAACGGATACCTCGGCAGAATTTGCTAAGGAAGC
TAAGCGAGTTTTTTACATTGCTCCAAACTCTCTATCCTTTGAGATGGAGCGAAAGGTCTTGGAATACCTGCCTGAACAGG
CAACTTTTGATATTATCGTGACCCGTTTTGGGCAATTGGCCCGCTATTTGATGATTGATAGGAAAGAAGCAGGTCAACCG
CTGGATGATGTTGGTCTGGCCATGATTTTCTTTCGTGTTCTATCGCAATTTGAAGATGGCGACTTGAAAGTCTATGGTCG
TTTGCAGACAGATTTTGGTTTCATTAACCAGCTAGTTGCTTTATACAAAGAATTGCAACGGGCAAATATGTCTATTTTGG
ACTTGGAAGCCATAGACTCACCAGATAAGCAGGCTGATTTGGTAAAGATTTTTCTGGCTGTAACTGAAATTTTGTCCAAA
GAAGGCTTTGAGCATCAGTCTAAGTTAGCACAGCTGACTAGCTTGGTGGAAACTGGTCAGTTGGATGAGCAGTTGAAGAA
CATTGTACTGGTGGTAGACGGATTTTCTCGTTTTTCGGCAGAAGAAGAAGCTTTAGTAAGTGCTTTAAATGAACGGGTGT
CGGAAATCCTGATTGGTGTATATGCCAGCAAGAAAGCTGTGCAAGCCACCTATGCGGAAGGCAATGTCTATCAAGCCAAC
GTTGACTTTTTACGTCAGTTATCAGCGCAGTTCCAGACTAAGGCTACTTATATTGGTCAAGAGCCAGTCTTGGACAGTAT
CGGTAAATTTTCAAAGAATATGGAAGCCTATTATGACTACAGCGGGACCATGATAGACTTGACTCCAGCAGATCAAGAAA
AAATCCAGCTATGGGAAGTCGTTAACCAAAAAGAAGAGGTGGAGCAGGTTGCGACTGCAATTCGTCAGCATGTGCATCAA
GGGGCTCGCTATAAAGACATTTTGTTGCTCTTGGGGGATGTGGATAGCTACAAGTTGCAGATTGGCAAGATTTTTGACAA
GTATGATATTCCTTACTATTTTGGCAAGGCAGAGGAGATGGGTCATCATCCGTTGGTCCATTTTGTGGAGTCCTTGGAAC
GTTTGCGCCGCTATCGTTTCCGAGCGGAAGACCTGCTCAATCTCCTCAAATCTGGTTTGTACGCCAGCATTTCCCAAAAG
GATCTGGACCTATTTGAGTCTTACATCCTCTTTGCGGATATGAAGGGGCAGGCTGCTTTTTCGAGGACTTTTTCGGTCAA
TGGCAGAGCAGACTATGATGCTGAAGTCATCAAGGAGAAAAGGCTTGTCTATGATTTGAATGTTTTGGAACCCCTACGTG
CTAAGATTATGGAGCCTTTGAACCAGTTGTTTAAGGCTGGACCACAATCTGGAGCTGCCTTGCTTGAGAAATTTATGGCA
TTTTTGGAGGCGATTGATCTTCCTAAAAATATGGAAAAAATGTCTCGAAATTTGAGCGAAGTAGAGCAAGAAAAAGAAGA
GCAGGTCTGGAAAAGTTTTACCCATATTCTTGAGAATTTTCATCAGATTTTCGGAAAAGAAAAATTGAAAATGGATGATT
TTCTGGCAATTTTACAGGCTGGAATGCAGGCCAGTCACTATCGTACCGTTCCTGCAACAGTTGATGTGGTCAATGTCAAA
TCCTATGATTTGATCGAGCCGCACACTGCAAAGTATGTTTATGCTATCGGAATGGGCCAGTCCAATTTTCCAAAAGTTGC
CAAGAATACCAGTCTATTGACGGAAGAAGAGATGGAAAAAGTCAATCTTGTCTCATCTAGTTCCTCACGTTTCGATTTGG
TCAGCCGAGAGAATATCAAGAAGAACCATGCTGCCATGATGTCTCTGCTTAATGCTGCGACGGAACAGTTAGTCATTTCA
ACTCCTCAGATTTATAACGAAGGTGAAGATAGTCTCTCCCCTTATATCAAGATTCTCCAAAAAATGGGGTTGAAATCCGA
AGAACGTGGTCGGATTAAAACACTTAGTCCACAAGACATCGGTCACTACAAGAGTCTCTTATCCCGTTTGATTGAGTCGG
AAAGACCAAGCCTTGAAACAGAGGAGTGGGAAGGGCAGAGGGCCTTCTGGACAGTCTTGGTTCGCCATTTGAAGAAGAAA
TTGGAGTCGCAAAGCATTGAAATTCCGACCATTACTGGTGATATTGCTTCTAAACAACTTTCAGATGAAACCTTGGCTGC
TTTATATCCAGAGGATAAGCCGCTCAATCTTTCTGCATCCAGCTTGACCAATTTCTACAATAACCAATATCTTTACTTTG
TCCGTAATGTTCTTCGCCTGCGGGAACAGGAATCCATCCATCCGACTGCCTTTCAGCATGGTTTGTTCTTGCATCGGATT
TTTGAACGAGTGGTCATGGACCAATCTGAGCTAGATTTTGATCAAAAAGTGGACAAGGCAATTCTGCGTACGCGTGACGA
GGCAGAATTTGCTATGTTTTATAACCAGGATGCGGATGCTCGTTATACGGAGGAGGTGCTGGATAAGATTGCTCGTTCCA
GTGCGACTATTTTGCGGGATAATGATTTGGTTGAAATTGATGGCCAGGAAAAGAGTTTCCGTCAGGATAAGGCGCTGGTT
TTTGACCTTCAAAATGGCAAGAGTGTGCATGTAAATGGTACCATTGACCGCTTGGATACCTTACAAATCAATCAGGCTGT
CGGTGTTGTGGATTACAAGTCCAGCGACCAATCTTTTTCAGTTGGGGATTTTTATAATGGTCTCAAACCTCAGTTGGTGA
CCTACTTGGCAGCCTTACAAGAGCTGGATGAAACCAAGGATAAACCTGTTTTTGGGGCTATGTATTTGCATTTGCAGGAT
CCGATTATCAAATTAAAAGACACGAAGAATTTAGAACAGCTAGAAGGAGCTGCCAATACTAGCTTGGTTTACAAGGGGCT
TTTCTTGAAGGAGGAAAGTCTGGGGCTCAATCATTTTTATCAGACTCGTAACCAACTCTACACGGAAGATGAGTTTGCGG
TTTTATTGAACCACAACCAAGAACTATACAAACAAGCTGCCATGGACATTCTGGCTGGTCGCTTTGCTATTAACCCTTAT
ACCAAAGATGGGCGTTCGGTGGCAGGTGAGCAGCTGAAGGCAATCACTGGTTTTGAGGCGGATCGGCACATGGGCATGGC
ACGGCGGTTGGTCAAAGAGGCCAAGCGTCAAGATTGGATGGAACGAATGAAAGGAGGTCAGGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(757-1041)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

45.15

100

0.458